miRNA display CGI


Results 101 - 120 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 74865 0.67 0.947618
Target:  5'- gGAGGugGGGGCaguGCCggUGGgUcgCCa -3'
miRNA:   3'- gCUUCugCUCCGg--CGGuuGCUgAa-GG- -5'
5511 3' -53.9 NC_001798.1 + 75242 0.71 0.806881
Target:  5'- uCGAGGuccaccccaAUGuGGCCGCC-ACGGCggUCCg -3'
miRNA:   3'- -GCUUC---------UGCuCCGGCGGuUGCUGa-AGG- -5'
5511 3' -53.9 NC_001798.1 + 75561 0.68 0.928542
Target:  5'- gGcGGACGuGGCCGCCcacCGGCcccucaUCCa -3'
miRNA:   3'- gCuUCUGCuCCGGCGGuu-GCUGa-----AGG- -5'
5511 3' -53.9 NC_001798.1 + 76124 0.68 0.928017
Target:  5'- cCGggGagccguauacagcGCGaAGGCCcugcagGCCAGCGACagCCa -3'
miRNA:   3'- -GCuuC-------------UGC-UCCGG------CGGUUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 76659 0.69 0.899345
Target:  5'- gCGAGGGCcaugGAGGCgGCCAagaugACGGCggagcucgcUCCg -3'
miRNA:   3'- -GCUUCUG----CUCCGgCGGU-----UGCUGa--------AGG- -5'
5511 3' -53.9 NC_001798.1 + 77261 0.72 0.760915
Target:  5'- uCGGcccuGGGCGcGGCCGCCcGCGACccggCCu -3'
miRNA:   3'- -GCU----UCUGCuCCGGCGGuUGCUGaa--GG- -5'
5511 3' -53.9 NC_001798.1 + 77400 0.68 0.917575
Target:  5'- uGggGuCGGcGGCCGCCGACcugguagUCCa -3'
miRNA:   3'- gCuuCuGCU-CCGGCGGUUGcuga---AGG- -5'
5511 3' -53.9 NC_001798.1 + 77646 0.66 0.966266
Target:  5'- aCGAAcuUGAGGCCGCCGuCGcCgaCCu -3'
miRNA:   3'- -GCUUcuGCUCCGGCGGUuGCuGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 77712 0.66 0.959475
Target:  5'- gCGAGcGCuGGGCCGCCGGCGucgaggcggcGCUggaCCg -3'
miRNA:   3'- -GCUUcUGcUCCGGCGGUUGC----------UGAa--GG- -5'
5511 3' -53.9 NC_001798.1 + 78566 0.66 0.969341
Target:  5'- gGGAGGCGcuGGCCGCgcGCGAgcgCCg -3'
miRNA:   3'- gCUUCUGCu-CCGGCGguUGCUgaaGG- -5'
5511 3' -53.9 NC_001798.1 + 79509 0.66 0.959475
Target:  5'- -cGGGGCGAGGCguaucugcgCGCCGGCGGagacCCg -3'
miRNA:   3'- gcUUCUGCUCCG---------GCGGUUGCUgaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 80838 0.67 0.95575
Target:  5'- -uGAGACGuGGGCCGUCGGCcuCcUCCa -3'
miRNA:   3'- gcUUCUGC-UCCGGCGGUUGcuGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 81051 0.71 0.815634
Target:  5'- gGGcaGCGAGGCCaCCGAgGAgCUUCCg -3'
miRNA:   3'- gCUucUGCUCCGGcGGUUgCU-GAAGG- -5'
5511 3' -53.9 NC_001798.1 + 81107 0.71 0.806881
Target:  5'- ---cGGCGAGcGCCGCCGACGcggacccCUUCUu -3'
miRNA:   3'- gcuuCUGCUC-CGGCGGUUGCu------GAAGG- -5'
5511 3' -53.9 NC_001798.1 + 82006 0.73 0.681923
Target:  5'- cCGggGGCGAccGCCGCCG-CGGCcgCCg -3'
miRNA:   3'- -GCuuCUGCUc-CGGCGGUuGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 82842 0.7 0.835946
Target:  5'- cCGccGACGAaccacccggcccauuGGCCGCCGACcACcUCCa -3'
miRNA:   3'- -GCuuCUGCU---------------CCGGCGGUUGcUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 83277 0.66 0.972211
Target:  5'- gGggGucuUGGGGUCGCgAACGACa--- -3'
miRNA:   3'- gCuuCu--GCUCCGGCGgUUGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 84495 0.68 0.923178
Target:  5'- uCGAAcGCGucccccgggcGGCCGCCGuAgGGCUUCCc -3'
miRNA:   3'- -GCUUcUGCu---------CCGGCGGU-UgCUGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 84747 0.69 0.871816
Target:  5'- gGgcGGCGGGGCCGUCgGGCG-CUUUUa -3'
miRNA:   3'- gCuuCUGCUCCGGCGG-UUGCuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 85293 0.73 0.712102
Target:  5'- gCGggGGcCGGGGuCCGCCcGCGGCccgCCc -3'
miRNA:   3'- -GCuuCU-GCUCC-GGCGGuUGCUGaa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.