miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 99509 0.7 0.856745
Target:  5'- aCGAAGGCccGGGCCacgucGCCGACGAC--CCg -3'
miRNA:   3'- -GCUUCUGc-UCCGG-----CGGUUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 98127 0.71 0.779707
Target:  5'- --cGGGCGcugauuGGGCCGUCAGCGAgUUUCa -3'
miRNA:   3'- gcuUCUGC------UCCGGCGGUUGCUgAAGG- -5'
5511 3' -53.9 NC_001798.1 + 97570 0.66 0.971933
Target:  5'- gCGAGGACGGggagcgcGGCCccgaGCCAGgGGCgcaggggCCg -3'
miRNA:   3'- -GCUUCUGCU-------CCGG----CGGUUgCUGaa-----GG- -5'
5511 3' -53.9 NC_001798.1 + 95688 0.68 0.923178
Target:  5'- gCGgcGGCgGGGGCgGCCGGCGuCgcCCg -3'
miRNA:   3'- -GCuuCUG-CUCCGgCGGUUGCuGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 95378 0.72 0.741668
Target:  5'- gGAGGGCGGGGCggcgguCGCCAgcaGCGugUUUg -3'
miRNA:   3'- gCUUCUGCUCCG------GCGGU---UGCugAAGg -5'
5511 3' -53.9 NC_001798.1 + 94984 0.66 0.966266
Target:  5'- uGcAGGCGGcGGCCGCCugggccccgcagGGCGGCgcgggCCu -3'
miRNA:   3'- gCuUCUGCU-CCGGCGG------------UUGCUGaa---GG- -5'
5511 3' -53.9 NC_001798.1 + 94565 0.66 0.969341
Target:  5'- -----cCGAGGCCGCCAaggcGCGGgUcgCCa -3'
miRNA:   3'- gcuucuGCUCCGGCGGU----UGCUgAa-GG- -5'
5511 3' -53.9 NC_001798.1 + 91659 0.68 0.928542
Target:  5'- aGggGGCGuGGCCGCC-----CUUCUa -3'
miRNA:   3'- gCuuCUGCuCCGGCGGuugcuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 91362 0.7 0.864385
Target:  5'- gGAAGcCG-GGCCGCCcGCGGCa--- -3'
miRNA:   3'- gCUUCuGCuCCGGCGGuUGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 91328 0.66 0.966266
Target:  5'- --cAGACGccGCCcgaGCCGcCGGCUUCCc -3'
miRNA:   3'- gcuUCUGCucCGG---CGGUuGCUGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 91240 0.7 0.864385
Target:  5'- gCGAGGugGGGGUuguagaaguucUGCCGGCGGCa--- -3'
miRNA:   3'- -GCUUCugCUCCG-----------GCGGUUGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 91089 0.69 0.892801
Target:  5'- cCGGAGGC--GGCCGUCGugGACc-CCg -3'
miRNA:   3'- -GCUUCUGcuCCGGCGGUugCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 88041 0.68 0.911734
Target:  5'- gGAGGGCaGGGCCGCUgggggGGCgGGCUcgUCCc -3'
miRNA:   3'- gCUUCUGcUCCGGCGG-----UUG-CUGA--AGG- -5'
5511 3' -53.9 NC_001798.1 + 86959 0.69 0.899345
Target:  5'- uGGAGcucugccugcACGAGcGCCGUCGcuaccGCGGCUUCUu -3'
miRNA:   3'- gCUUC----------UGCUC-CGGCGGU-----UGCUGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 86083 0.67 0.938554
Target:  5'- gGGAGuCGGGGCC-CCGGCuGCgcgCCg -3'
miRNA:   3'- gCUUCuGCUCCGGcGGUUGcUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 86022 0.66 0.969341
Target:  5'- cCGGAGACGuGGGCguaCGCCGACcugaUCCu -3'
miRNA:   3'- -GCUUCUGC-UCCG---GCGGUUGcugaAGG- -5'
5511 3' -53.9 NC_001798.1 + 85975 0.7 0.840862
Target:  5'- aCGggGAguuCGAGGCCGCCGccGgGGCg--- -3'
miRNA:   3'- -GCuuCU---GCUCCGGCGGU--UgCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 85349 0.68 0.923178
Target:  5'- uGGAcACGGGGCCcuucGCCG-CGGCgUCCg -3'
miRNA:   3'- gCUUcUGCUCCGG----CGGUuGCUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 85293 0.73 0.712102
Target:  5'- gCGggGGcCGGGGuCCGCCcGCGGCccgCCc -3'
miRNA:   3'- -GCuuCU-GCUCC-GGCGGuUGCUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 84747 0.69 0.871816
Target:  5'- gGgcGGCGGGGCCGUCgGGCG-CUUUUa -3'
miRNA:   3'- gCuuCUGCUCCGGCGG-UUGCuGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.