miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 22919 0.82 0.285996
Target:  5'- aCGAAGACGAGGCCGaCGACGcCgccgCCg -3'
miRNA:   3'- -GCUUCUGCUCCGGCgGUUGCuGaa--GG- -5'
5511 3' -53.9 NC_001798.1 + 4301 0.79 0.383449
Target:  5'- aGGAGGCgGAGGaCGCCGACGACgaggaUCCg -3'
miRNA:   3'- gCUUCUG-CUCCgGCGGUUGCUGa----AGG- -5'
5511 3' -53.9 NC_001798.1 + 150126 0.78 0.435295
Target:  5'- gGAGGACGAGGCCGCgGGgccCGAg-UCCg -3'
miRNA:   3'- gCUUCUGCUCCGGCGgUU---GCUgaAGG- -5'
5511 3' -53.9 NC_001798.1 + 66899 0.77 0.472023
Target:  5'- aCGggGGCGGGGCCGUCGcuccaucuGCGACgaaCg -3'
miRNA:   3'- -GCuuCUGCUCCGGCGGU--------UGCUGaagG- -5'
5511 3' -53.9 NC_001798.1 + 29493 0.76 0.520018
Target:  5'- cCGggGACGGGGCCGCCccgagagggGGgGAUUcCCu -3'
miRNA:   3'- -GCuuCUGCUCCGGCGG---------UUgCUGAaGG- -5'
5511 3' -53.9 NC_001798.1 + 4898 0.76 0.529853
Target:  5'- cCGGAGAucCGGGGCCGCCGGuCGuCU-CCg -3'
miRNA:   3'- -GCUUCU--GCUCCGGCGGUU-GCuGAaGG- -5'
5511 3' -53.9 NC_001798.1 + 2267 0.76 0.55974
Target:  5'- gGggGGCGGGGCgGCgCAGCGcGCggCCa -3'
miRNA:   3'- gCuuCUGCUCCGgCG-GUUGC-UGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 124506 0.75 0.579925
Target:  5'- gCGggGGgGGGGCUGCgGGCGugUcgUCCc -3'
miRNA:   3'- -GCuuCUgCUCCGGCGgUUGCugA--AGG- -5'
5511 3' -53.9 NC_001798.1 + 101209 0.75 0.590077
Target:  5'- aCGAGGACGAGGCCGgaGACGAa---- -3'
miRNA:   3'- -GCUUCUGCUCCGGCggUUGCUgaagg -5'
5511 3' -53.9 NC_001798.1 + 56781 0.75 0.590077
Target:  5'- gGggGGCccuGGCCGCCGACGGCcgCg -3'
miRNA:   3'- gCuuCUGcu-CCGGCGGUUGCUGaaGg -5'
5511 3' -53.9 NC_001798.1 + 153683 0.75 0.590077
Target:  5'- gCGggGACGcggGGGCCGCCGcCGGCg--- -3'
miRNA:   3'- -GCuuCUGC---UCCGGCGGUuGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 15102 0.75 0.609443
Target:  5'- gGAAGGCGAGGCCGgUGGCG-CUgucgucgUCCu -3'
miRNA:   3'- gCUUCUGCUCCGGCgGUUGCuGA-------AGG- -5'
5511 3' -53.9 NC_001798.1 + 20883 0.75 0.610465
Target:  5'- gGAGGACGGGG-CGUCuGCG-CUUCCg -3'
miRNA:   3'- gCUUCUGCUCCgGCGGuUGCuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 16434 0.74 0.620687
Target:  5'- uGggGACGGcGGCuCGCCGccGCGACacccUCCa -3'
miRNA:   3'- gCuuCUGCU-CCG-GCGGU--UGCUGa---AGG- -5'
5511 3' -53.9 NC_001798.1 + 35438 0.74 0.630918
Target:  5'- gGGAGGCGuGGGCCGCUGGCGccGCggCCc -3'
miRNA:   3'- gCUUCUGC-UCCGGCGGUUGC--UGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 141208 0.74 0.630918
Target:  5'- cCGcGGGACgGGGGCC-CgGACGACUUCCc -3'
miRNA:   3'- -GC-UUCUG-CUCCGGcGgUUGCUGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 3294 0.74 0.64115
Target:  5'- cCGgcGACGccGCCGCCGACGGCa--- -3'
miRNA:   3'- -GCuuCUGCucCGGCGGUUGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 105608 0.74 0.671769
Target:  5'- uCGAGGGCGgcGGGCgGgCGACGACggcgcUCCg -3'
miRNA:   3'- -GCUUCUGC--UCCGgCgGUUGCUGa----AGG- -5'
5511 3' -53.9 NC_001798.1 + 24846 0.74 0.671769
Target:  5'- gCGGcaGCGAGGCCGCCGugG-CcgCCg -3'
miRNA:   3'- -GCUucUGCUCCGGCGGUugCuGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 82006 0.73 0.681923
Target:  5'- cCGggGGCGAccGCCGCCG-CGGCcgCCg -3'
miRNA:   3'- -GCuuCUGCUc-CGGCGGUuGCUGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.