miRNA display CGI


Results 1 - 20 of 198 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 667 0.66 0.974883
Target:  5'- gGGAGACGu-GCCGCCcgccCGACccCCg -3'
miRNA:   3'- gCUUCUGCucCGGCGGuu--GCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 1145 0.69 0.879032
Target:  5'- uCGgcGGCGuGGCCaGCCccGCGGCggUCCc -3'
miRNA:   3'- -GCuuCUGCuCCGG-CGGu-UGCUGa-AGG- -5'
5511 3' -53.9 NC_001798.1 + 1396 0.71 0.824221
Target:  5'- aCGuAGACG-GGCCGC-AGCGGCgcgCCc -3'
miRNA:   3'- -GCuUCUGCuCCGGCGgUUGCUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 2267 0.76 0.55974
Target:  5'- gGggGGCGGGGCgGCgCAGCGcGCggCCa -3'
miRNA:   3'- gCuuCUGCUCCGgCG-GUUGC-UGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 2413 0.72 0.740695
Target:  5'- cCGAGGGCGccggcguguggcuGGGCC-CCGGCGGCUggcggcgCCa -3'
miRNA:   3'- -GCUUCUGC-------------UCCGGcGGUUGCUGAa------GG- -5'
5511 3' -53.9 NC_001798.1 + 2505 0.67 0.951799
Target:  5'- gCGggGcGCGGcGGCCGCggCGGCGGCgUCg -3'
miRNA:   3'- -GCuuC-UGCU-CCGGCG--GUUGCUGaAGg -5'
5511 3' -53.9 NC_001798.1 + 2607 0.69 0.871816
Target:  5'- gGggGGCGcggGGcGCCGCCcGGCGGCgcCCu -3'
miRNA:   3'- gCuuCUGC---UC-CGGCGG-UUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 2679 0.7 0.856745
Target:  5'- gCGGAGGCGGGcGCgGCgAGCGAgUcggCCg -3'
miRNA:   3'- -GCUUCUGCUC-CGgCGgUUGCUgAa--GG- -5'
5511 3' -53.9 NC_001798.1 + 2957 0.67 0.947618
Target:  5'- gCGcAGGCGGGGCgCGUCGGCGugcggcgggGCggCCg -3'
miRNA:   3'- -GCuUCUGCUCCG-GCGGUUGC---------UGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 3294 0.74 0.64115
Target:  5'- cCGgcGACGccGCCGCCGACGGCa--- -3'
miRNA:   3'- -GCuuCUGCucCGGCGGUUGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 3891 0.68 0.911734
Target:  5'- cCGggGGCGggGGGCCGgCCccgggccACGGCUcCCc -3'
miRNA:   3'- -GCuuCUGC--UCCGGC-GGu------UGCUGAaGG- -5'
5511 3' -53.9 NC_001798.1 + 3957 0.72 0.731896
Target:  5'- aGAAGGCgccgGAGGCCGCgu-CGGCgUCCa -3'
miRNA:   3'- gCUUCUG----CUCCGGCGguuGCUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 4216 0.67 0.943204
Target:  5'- gCGcuGGCGGGGgCGCgGGCGGCgUCg -3'
miRNA:   3'- -GCuuCUGCUCCgGCGgUUGCUGaAGg -5'
5511 3' -53.9 NC_001798.1 + 4301 0.79 0.383449
Target:  5'- aGGAGGCgGAGGaCGCCGACGACgaggaUCCg -3'
miRNA:   3'- gCUUCUG-CUCCgGCGGUUGCUGa----AGG- -5'
5511 3' -53.9 NC_001798.1 + 4359 0.67 0.951799
Target:  5'- gCGccGGCGggGGGCgCGCCGGCGGCg--- -3'
miRNA:   3'- -GCuuCUGC--UCCG-GCGGUUGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 4593 0.66 0.966266
Target:  5'- aGAAGGCGAgcgGGCCGCUu----CUUCUu -3'
miRNA:   3'- gCUUCUGCU---CCGGCGGuugcuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 4704 0.69 0.903787
Target:  5'- -cGAGACGAcgccguccgcggcaGGCuCGUCGACGGCcUCCc -3'
miRNA:   3'- gcUUCUGCU--------------CCG-GCGGUUGCUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 4744 0.68 0.911734
Target:  5'- cCGGAcGcCGGGGCCGCCucguCGGCaUCg -3'
miRNA:   3'- -GCUU-CuGCUCCGGCGGuu--GCUGaAGg -5'
5511 3' -53.9 NC_001798.1 + 4898 0.76 0.529853
Target:  5'- cCGGAGAucCGGGGCCGCCGGuCGuCU-CCg -3'
miRNA:   3'- -GCUUCU--GCUCCGGCGGUU-GCuGAaGG- -5'
5511 3' -53.9 NC_001798.1 + 5587 0.72 0.769433
Target:  5'- aGggGccgGCGAGGUCGCCccguugguccgcgGGCGGCU-CCg -3'
miRNA:   3'- gCuuC---UGCUCCGGCGG-------------UUGCUGAaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.