miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 5' -59.2 NC_001798.1 + 48686 0.66 0.771668
Target:  5'- -cGGGCCGCCcggAGCGGUgGGg---AAGu -3'
miRNA:   3'- uaCCCGGCGG---UCGUCAgCCaggaUUC- -5'
5511 5' -59.2 NC_001798.1 + 59830 0.66 0.771668
Target:  5'- cUGGGgCGCC-GCGGUCGcccgcGUCCggcucgGAGg -3'
miRNA:   3'- uACCCgGCGGuCGUCAGC-----CAGGa-----UUC- -5'
5511 5' -59.2 NC_001798.1 + 36149 0.66 0.762307
Target:  5'- -gGGGCgCGgCGGCGGUCGGgg-UGGGg -3'
miRNA:   3'- uaCCCG-GCgGUCGUCAGCCaggAUUC- -5'
5511 5' -59.2 NC_001798.1 + 145821 0.66 0.752833
Target:  5'- -cGGGCgCGgCGGCGGUCGGgg-UGGGa -3'
miRNA:   3'- uaCCCG-GCgGUCGUCAGCCaggAUUC- -5'
5511 5' -59.2 NC_001798.1 + 4908 0.66 0.752833
Target:  5'- -gGGGCCGCCGGUcGUcuccgccgCGGcCCgGAGa -3'
miRNA:   3'- uaCCCGGCGGUCGuCA--------GCCaGGaUUC- -5'
5511 5' -59.2 NC_001798.1 + 4369 0.66 0.752833
Target:  5'- -gGGGCgCGCCGGCGG-CGGUg----- -3'
miRNA:   3'- uaCCCG-GCGGUCGUCaGCCAggauuc -5'
5511 5' -59.2 NC_001798.1 + 152629 0.66 0.73746
Target:  5'- gAUGGGaguccccccggcgccCCGCCGGCg--CGGcCCUGAGu -3'
miRNA:   3'- -UACCC---------------GGCGGUCGucaGCCaGGAUUC- -5'
5511 5' -59.2 NC_001798.1 + 122818 0.66 0.73358
Target:  5'- cUGGGCgGCCagGGCGGUCGGg------ -3'
miRNA:   3'- uACCCGgCGG--UCGUCAGCCaggauuc -5'
5511 5' -59.2 NC_001798.1 + 88048 0.67 0.663937
Target:  5'- -aGGGCCGCUGGgGGggCGGgcucguccCCUGGGg -3'
miRNA:   3'- uaCCCGGCGGUCgUCa-GCCa-------GGAUUC- -5'
5511 5' -59.2 NC_001798.1 + 54700 0.68 0.653818
Target:  5'- -cGaGGCCGCCGgggucuacgacGCGGUgCGGaCCUGGGg -3'
miRNA:   3'- uaC-CCGGCGGU-----------CGUCA-GCCaGGAUUC- -5'
5511 5' -59.2 NC_001798.1 + 146576 0.68 0.653818
Target:  5'- -cGGGCCgcggGCCAGCAGaCGGgCCg--- -3'
miRNA:   3'- uaCCCGG----CGGUCGUCaGCCaGGauuc -5'
5511 5' -59.2 NC_001798.1 + 54387 0.68 0.643683
Target:  5'- -gGGGCCGCgGcGCGGUCGG-CggGAGc -3'
miRNA:   3'- uaCCCGGCGgU-CGUCAGCCaGgaUUC- -5'
5511 5' -59.2 NC_001798.1 + 105409 0.68 0.613254
Target:  5'- -aGGGCCGCC-GCGGccgCGGUgCgCUGGGc -3'
miRNA:   3'- uaCCCGGCGGuCGUCa--GCCA-G-GAUUC- -5'
5511 5' -59.2 NC_001798.1 + 77719 0.68 0.613254
Target:  5'- cUGGGCCGCCGGC-GUCGaGgcggCgCUGGa -3'
miRNA:   3'- uACCCGGCGGUCGuCAGC-Ca---G-GAUUc -5'
5511 5' -59.2 NC_001798.1 + 72230 0.68 0.613254
Target:  5'- -gGGGCCGUCgAGCAGcugcggcccgCGGUCCa--- -3'
miRNA:   3'- uaCCCGGCGG-UCGUCa---------GCCAGGauuc -5'
5511 5' -59.2 NC_001798.1 + 71582 0.69 0.593026
Target:  5'- -cGGGCgGCUcugugaGGCGGUCGG-CCUGu- -3'
miRNA:   3'- uaCCCGgCGG------UCGUCAGCCaGGAUuc -5'
5511 5' -59.2 NC_001798.1 + 35444 0.69 0.562909
Target:  5'- cGUGGGCCGCUGGCGccgCGGcCCg--- -3'
miRNA:   3'- -UACCCGGCGGUCGUca-GCCaGGauuc -5'
5511 5' -59.2 NC_001798.1 + 75256 0.69 0.562909
Target:  5'- aAUGuGGCCGCCA-CGG-CGGUCCg--- -3'
miRNA:   3'- -UAC-CCGGCGGUcGUCaGCCAGGauuc -5'
5511 5' -59.2 NC_001798.1 + 2049 0.71 0.46641
Target:  5'- -aGGGCCGCCAGCAGgcaGGacagCCc--- -3'
miRNA:   3'- uaCCCGGCGGUCGUCag-CCa---GGauuc -5'
5511 5' -59.2 NC_001798.1 + 138940 0.71 0.448116
Target:  5'- cGUGGGCaaaGuCCAGCAG-CGucGUCCUGAGc -3'
miRNA:   3'- -UACCCGg--C-GGUCGUCaGC--CAGGAUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.