miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5512 3' -58.4 NC_001798.1 + 45164 0.66 0.840899
Target:  5'- --cCCGGGacucgaGGGCUCCAccaucGACGggGc -3'
miRNA:   3'- gacGGCCCaug---CCCGAGGU-----CUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 26999 0.66 0.816198
Target:  5'- -nGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3'
miRNA:   3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 26969 0.66 0.816198
Target:  5'- -gGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3'
miRNA:   3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 26880 0.66 0.816198
Target:  5'- -nGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3'
miRNA:   3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 26850 0.66 0.816198
Target:  5'- -nGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3'
miRNA:   3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 26820 0.66 0.816198
Target:  5'- -gGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3'
miRNA:   3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 13486 0.66 0.807634
Target:  5'- aUGCUGGGgggcuggaACGGGUccUCCAGGCucGGc -3'
miRNA:   3'- gACGGCCCa-------UGCCCG--AGGUCUGcuUC- -5'
5512 3' -58.4 NC_001798.1 + 116182 0.66 0.807634
Target:  5'- cCUGCCGGGcccggagcuggGCGGGCaggCuCAGGCcGAGc -3'
miRNA:   3'- -GACGGCCCa----------UGCCCGa--G-GUCUGcUUC- -5'
5512 3' -58.4 NC_001798.1 + 51482 0.66 0.798917
Target:  5'- gUGUCGGGccCGGaGCUgCAGGCGGc- -3'
miRNA:   3'- gACGGCCCauGCC-CGAgGUCUGCUuc -5'
5512 3' -58.4 NC_001798.1 + 106117 0.66 0.816198
Target:  5'- -cGCCGGGUcUGcGGUUCCGG-CGGc- -3'
miRNA:   3'- gaCGGCCCAuGC-CCGAGGUCuGCUuc -5'
5512 3' -58.4 NC_001798.1 + 121693 0.66 0.816198
Target:  5'- -gGCUGGGggcCGcGGCUCCcgccgccgcGACGGAGg -3'
miRNA:   3'- gaCGGCCCau-GC-CCGAGGu--------CUGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 48155 0.66 0.816198
Target:  5'- -cGCCGcGGU-CGGGCgCCuGGCGGc- -3'
miRNA:   3'- gaCGGC-CCAuGCCCGaGGuCUGCUuc -5'
5512 3' -58.4 NC_001798.1 + 31786 0.66 0.840899
Target:  5'- -cGCgCGGGU-CGGGagggCCGGGCGcGGa -3'
miRNA:   3'- gaCG-GCCCAuGCCCga--GGUCUGCuUC- -5'
5512 3' -58.4 NC_001798.1 + 31044 0.66 0.840899
Target:  5'- -gGUCGGG--CGGGggUCGGGCGggGg -3'
miRNA:   3'- gaCGGCCCauGCCCgaGGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 152219 0.66 0.832838
Target:  5'- gUGCCGGGggucugccgcgGCGGccGCUCgGGGcCGggGu -3'
miRNA:   3'- gACGGCCCa----------UGCC--CGAGgUCU-GCuuC- -5'
5512 3' -58.4 NC_001798.1 + 146296 0.66 0.832838
Target:  5'- -aGCgGGGagUGGGCggCCGGGCGGGa -3'
miRNA:   3'- gaCGgCCCauGCCCGa-GGUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 41463 0.66 0.824602
Target:  5'- -cGCCGGGgggggcggucgGCGGGC-CCAGAa---- -3'
miRNA:   3'- gaCGGCCCa----------UGCCCGaGGUCUgcuuc -5'
5512 3' -58.4 NC_001798.1 + 146085 0.66 0.824602
Target:  5'- -gGuCCGGGgcgagGCGGGC---GGGCGAAGg -3'
miRNA:   3'- gaC-GGCCCa----UGCCCGaggUCUGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 24892 0.66 0.823769
Target:  5'- -cGCCGGGgcccUGGGC-CCGGcgcugccGCGGAGc -3'
miRNA:   3'- gaCGGCCCau--GCCCGaGGUC-------UGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 2263 0.66 0.81958
Target:  5'- -cGCCGGGggGCgGGGCggcgcagcgcgcggCCAG-CGAGGc -3'
miRNA:   3'- gaCGGCCCa-UG-CCCGa-------------GGUCuGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.