Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 149665 | 0.76 | 0.281179 |
Target: 5'- -cGCCGGGUcGCGGGCcCCGGGCucGGg -3' miRNA: 3'- gaCGGCCCA-UGCCCGaGGUCUGcuUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 34832 | 0.76 | 0.301116 |
Target: 5'- -cGCCGGGggccCGGGCcggaccgCCGGGCGggGg -3' miRNA: 3'- gaCGGCCCau--GCCCGa------GGUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 6236 | 0.76 | 0.308 |
Target: 5'- -gGCCGGGgggACGGGCgggGGACGggGg -3' miRNA: 3'- gaCGGCCCa--UGCCCGaggUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 36493 | 0.75 | 0.344213 |
Target: 5'- -cGCCGGcGcgacGCGGGCggCCGGGCGggGg -3' miRNA: 3'- gaCGGCC-Ca---UGCCCGa-GGUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 36574 | 0.74 | 0.375321 |
Target: 5'- -gGCCGGGcGgGGGCgcgcggcggCCGGGCGggGg -3' miRNA: 3'- gaCGGCCCaUgCCCGa--------GGUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 36532 | 0.74 | 0.375321 |
Target: 5'- -gGCCGGGcGgGGGCgcgcggcggCCGGGCGggGg -3' miRNA: 3'- gaCGGCCCaUgCCCGa--------GGUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 36616 | 0.74 | 0.375321 |
Target: 5'- -gGCCGGGcGgGGGCgcgcggcggCCGGGCGggGg -3' miRNA: 3'- gaCGGCCCaUgCCCGa--------GGUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 86265 | 0.74 | 0.375321 |
Target: 5'- -gGCCGGGggcGCGGGCgcaCCGG-CGggGa -3' miRNA: 3'- gaCGGCCCa--UGCCCGa--GGUCuGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 20359 | 0.74 | 0.383389 |
Target: 5'- gCUGCCGGG--CGGGUUCgGGGCGGc- -3' miRNA: 3'- -GACGGCCCauGCCCGAGgUCUGCUuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 4047 | 0.74 | 0.399868 |
Target: 5'- -cGCgCGGGcccgGCGGcGCUCCAGGCGGc- -3' miRNA: 3'- gaCG-GCCCa---UGCC-CGAGGUCUGCUuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 34979 | 0.73 | 0.408274 |
Target: 5'- -cGCCGaGGUGCGGGggcccCUCCGGcCGggGc -3' miRNA: 3'- gaCGGC-CCAUGCCC-----GAGGUCuGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 8787 | 0.73 | 0.408274 |
Target: 5'- uCUGCCGGG-ACGGGCgaggCC--GCGggGu -3' miRNA: 3'- -GACGGCCCaUGCCCGa---GGucUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 153332 | 0.73 | 0.442977 |
Target: 5'- -aGCuCGGGccuCGGGCUCCAGGCa--- -3' miRNA: 3'- gaCG-GCCCau-GCCCGAGGUCUGcuuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 30950 | 0.73 | 0.451911 |
Target: 5'- -gGCgGGGgGCGGGCgggggUCGGGCGggGg -3' miRNA: 3'- gaCGgCCCaUGCCCGa----GGUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 147485 | 0.73 | 0.451911 |
Target: 5'- -cGCCGGGggACccaGGCUCCGGGgGggGg -3' miRNA: 3'- gaCGGCCCa-UGc--CCGAGGUCUgCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 149453 | 0.72 | 0.479283 |
Target: 5'- -aGCaGGGUGCGgcGGCUCCAcGCGggGg -3' miRNA: 3'- gaCGgCCCAUGC--CCGAGGUcUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 122129 | 0.71 | 0.5266 |
Target: 5'- -aGCCGGGggggccccCGGGC-CgCGGGCGAGGa -3' miRNA: 3'- gaCGGCCCau------GCCCGaG-GUCUGCUUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 102463 | 0.7 | 0.575563 |
Target: 5'- --cCCGGGUACGGGUgggCgGGAgGAGGc -3' miRNA: 3'- gacGGCCCAUGCCCGa--GgUCUgCUUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 2990 | 0.7 | 0.585495 |
Target: 5'- -gGCCGGcccGCGGGCcCCGGGCGcGGg -3' miRNA: 3'- gaCGGCCca-UGCCCGaGGUCUGCuUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 4098 | 0.7 | 0.585495 |
Target: 5'- -gGCCGGG-GCGGGCUCggcccUGGGCGGGc -3' miRNA: 3'- gaCGGCCCaUGCCCGAG-----GUCUGCUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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