miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5512 3' -58.4 NC_001798.1 + 149665 0.76 0.281179
Target:  5'- -cGCCGGGUcGCGGGCcCCGGGCucGGg -3'
miRNA:   3'- gaCGGCCCA-UGCCCGaGGUCUGcuUC- -5'
5512 3' -58.4 NC_001798.1 + 34832 0.76 0.301116
Target:  5'- -cGCCGGGggccCGGGCcggaccgCCGGGCGggGg -3'
miRNA:   3'- gaCGGCCCau--GCCCGa------GGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 6236 0.76 0.308
Target:  5'- -gGCCGGGgggACGGGCgggGGACGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCGaggUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 36493 0.75 0.344213
Target:  5'- -cGCCGGcGcgacGCGGGCggCCGGGCGggGg -3'
miRNA:   3'- gaCGGCC-Ca---UGCCCGa-GGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 36574 0.74 0.375321
Target:  5'- -gGCCGGGcGgGGGCgcgcggcggCCGGGCGggGg -3'
miRNA:   3'- gaCGGCCCaUgCCCGa--------GGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 36532 0.74 0.375321
Target:  5'- -gGCCGGGcGgGGGCgcgcggcggCCGGGCGggGg -3'
miRNA:   3'- gaCGGCCCaUgCCCGa--------GGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 36616 0.74 0.375321
Target:  5'- -gGCCGGGcGgGGGCgcgcggcggCCGGGCGggGg -3'
miRNA:   3'- gaCGGCCCaUgCCCGa--------GGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 86265 0.74 0.375321
Target:  5'- -gGCCGGGggcGCGGGCgcaCCGG-CGggGa -3'
miRNA:   3'- gaCGGCCCa--UGCCCGa--GGUCuGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 20359 0.74 0.383389
Target:  5'- gCUGCCGGG--CGGGUUCgGGGCGGc- -3'
miRNA:   3'- -GACGGCCCauGCCCGAGgUCUGCUuc -5'
5512 3' -58.4 NC_001798.1 + 4047 0.74 0.399868
Target:  5'- -cGCgCGGGcccgGCGGcGCUCCAGGCGGc- -3'
miRNA:   3'- gaCG-GCCCa---UGCC-CGAGGUCUGCUuc -5'
5512 3' -58.4 NC_001798.1 + 34979 0.73 0.408274
Target:  5'- -cGCCGaGGUGCGGGggcccCUCCGGcCGggGc -3'
miRNA:   3'- gaCGGC-CCAUGCCC-----GAGGUCuGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 8787 0.73 0.408274
Target:  5'- uCUGCCGGG-ACGGGCgaggCC--GCGggGu -3'
miRNA:   3'- -GACGGCCCaUGCCCGa---GGucUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 153332 0.73 0.442977
Target:  5'- -aGCuCGGGccuCGGGCUCCAGGCa--- -3'
miRNA:   3'- gaCG-GCCCau-GCCCGAGGUCUGcuuc -5'
5512 3' -58.4 NC_001798.1 + 30950 0.73 0.451911
Target:  5'- -gGCgGGGgGCGGGCgggggUCGGGCGggGg -3'
miRNA:   3'- gaCGgCCCaUGCCCGa----GGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 147485 0.73 0.451911
Target:  5'- -cGCCGGGggACccaGGCUCCGGGgGggGg -3'
miRNA:   3'- gaCGGCCCa-UGc--CCGAGGUCUgCuuC- -5'
5512 3' -58.4 NC_001798.1 + 149453 0.72 0.479283
Target:  5'- -aGCaGGGUGCGgcGGCUCCAcGCGggGg -3'
miRNA:   3'- gaCGgCCCAUGC--CCGAGGUcUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 122129 0.71 0.5266
Target:  5'- -aGCCGGGggggccccCGGGC-CgCGGGCGAGGa -3'
miRNA:   3'- gaCGGCCCau------GCCCGaG-GUCUGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 102463 0.7 0.575563
Target:  5'- --cCCGGGUACGGGUgggCgGGAgGAGGc -3'
miRNA:   3'- gacGGCCCAUGCCCGa--GgUCUgCUUC- -5'
5512 3' -58.4 NC_001798.1 + 2990 0.7 0.585495
Target:  5'- -gGCCGGcccGCGGGCcCCGGGCGcGGg -3'
miRNA:   3'- gaCGGCCca-UGCCCGaGGUCUGCuUC- -5'
5512 3' -58.4 NC_001798.1 + 4098 0.7 0.585495
Target:  5'- -gGCCGGG-GCGGGCUCggcccUGGGCGGGc -3'
miRNA:   3'- gaCGGCCCaUGCCCGAG-----GUCUGCUUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.