miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5512 3' -58.4 NC_001798.1 + 2263 0.66 0.81958
Target:  5'- -cGCCGGGggGCgGGGCggcgcagcgcgcggCCAG-CGAGGc -3'
miRNA:   3'- gaCGGCCCa-UG-CCCGa-------------GGUCuGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 2990 0.7 0.585495
Target:  5'- -gGCCGGcccGCGGGCcCCGGGCGcGGg -3'
miRNA:   3'- gaCGGCCca-UGCCCGaGGUCUGCuUC- -5'
5512 3' -58.4 NC_001798.1 + 4047 0.74 0.399868
Target:  5'- -cGCgCGGGcccgGCGGcGCUCCAGGCGGc- -3'
miRNA:   3'- gaCG-GCCCa---UGCC-CGAGGUCUGCUuc -5'
5512 3' -58.4 NC_001798.1 + 4098 0.7 0.585495
Target:  5'- -gGCCGGG-GCGGGCUCggcccUGGGCGGGc -3'
miRNA:   3'- gaCGGCCCaUGCCCGAG-----GUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 5905 0.69 0.675506
Target:  5'- -cGCCccgagGCGGGC-CCGGACGggGg -3'
miRNA:   3'- gaCGGccca-UGCCCGaGGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 6236 0.76 0.308
Target:  5'- -gGCCGGGgggACGGGCgggGGACGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCGaggUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 6268 0.68 0.724675
Target:  5'- -gGCCGGGgggACGGGCcggggggaCGGGcCGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCGag------GUCU-GCuuC- -5'
5512 3' -58.4 NC_001798.1 + 6307 0.68 0.724675
Target:  5'- -gGCCGGGgggACGGGCcggggggaCGGGcCGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCGag------GUCU-GCuuC- -5'
5512 3' -58.4 NC_001798.1 + 6359 0.7 0.605449
Target:  5'- -gGCCGGGgggACGGGCcggggggCCGGGgggcCGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCGa------GGUCU----GCuuC- -5'
5512 3' -58.4 NC_001798.1 + 6404 0.67 0.781057
Target:  5'- -gGCCGGGgggACGGGg---GGACGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCgaggUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 6545 0.67 0.790055
Target:  5'- -gGCCGGGgggACGGGgggacgggCCggggGGACGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCga------GG----UCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 6587 0.67 0.790055
Target:  5'- -gGCCGGGgggACGGGgggacgggCCggggGGACGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCga------GG----UCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 8787 0.73 0.408274
Target:  5'- uCUGCCGGG-ACGGGCgaggCC--GCGggGu -3'
miRNA:   3'- -GACGGCCCaUGCCCGa---GGucUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 10391 0.67 0.788266
Target:  5'- -gGUCGGGgucggcacagggGCGGGCUCCAcGACc--- -3'
miRNA:   3'- gaCGGCCCa-----------UGCCCGAGGU-CUGcuuc -5'
5512 3' -58.4 NC_001798.1 + 13486 0.66 0.807634
Target:  5'- aUGCUGGGgggcuggaACGGGUccUCCAGGCucGGc -3'
miRNA:   3'- gACGGCCCa-------UGCCCG--AGGUCUGcuUC- -5'
5512 3' -58.4 NC_001798.1 + 16067 0.67 0.743867
Target:  5'- -cGCUGGGggcgGCGGGCgUCuGugGggGc -3'
miRNA:   3'- gaCGGCCCa---UGCCCGaGGuCugCuuC- -5'
5512 3' -58.4 NC_001798.1 + 20359 0.74 0.383389
Target:  5'- gCUGCCGGG--CGGGUUCgGGGCGGc- -3'
miRNA:   3'- -GACGGCCCauGCCCGAGgUCUGCUuc -5'
5512 3' -58.4 NC_001798.1 + 24892 0.66 0.823769
Target:  5'- -cGCCGGGgcccUGGGC-CCGGcgcugccGCGGAGc -3'
miRNA:   3'- gaCGGCCCau--GCCCGaGGUC-------UGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 25608 0.69 0.685441
Target:  5'- -cGCCGGGgGCGGGCcCCcccCGGAGu -3'
miRNA:   3'- gaCGGCCCaUGCCCGaGGucuGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 26820 0.66 0.816198
Target:  5'- -gGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3'
miRNA:   3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.