Results 1 - 20 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5512 | 5' | -59 | NC_001798.1 | + | 34006 | 0.66 | 0.789384 |
Target: 5'- -cCCCCGcCCGCGCCCaCGCGguagaggaaggggaCgGGCg -3' miRNA: 3'- aaGGGGUaGGCGUGGG-GUGUa-------------GaCCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 4173 | 0.66 | 0.786668 |
Target: 5'- cUCgUCGUCCGCGCcgagggucccgCCCGCGgcguggucugcggcgCUGGCg -3' miRNA: 3'- aAGgGGUAGGCGUG-----------GGGUGUa--------------GACCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 149678 | 0.66 | 0.785761 |
Target: 5'- -gCCCCGggcucggggCCGC-CCUCGCGUggcgcgucuucCUGGCa -3' miRNA: 3'- aaGGGGUa--------GGCGuGGGGUGUA-----------GACCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 29098 | 0.66 | 0.785761 |
Target: 5'- gUCCCgG-CCGCcauCCCCGCGcaUGGUa -3' miRNA: 3'- aAGGGgUaGGCGu--GGGGUGUagACCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 35464 | 0.66 | 0.785761 |
Target: 5'- --gCCCGUCUGCuggCCCGCGgcccgucugCUGGCc -3' miRNA: 3'- aagGGGUAGGCGug-GGGUGUa--------GACCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 151990 | 0.66 | 0.785761 |
Target: 5'- cUCCCCccCUGUcCCCCGCucUCgGGCu -3' miRNA: 3'- aAGGGGuaGGCGuGGGGUGu-AGaCCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 139317 | 0.66 | 0.785761 |
Target: 5'- -cCCCgCGUCCGCAUcgccggcgCCCGCGcgcgCUGuGCg -3' miRNA: 3'- aaGGG-GUAGGCGUG--------GGGUGUa---GAC-CG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 134437 | 0.66 | 0.783029 |
Target: 5'- -gCCCUGUCCGCgcgcgucgccgagcACCCCggcgcGCggUUGGCg -3' miRNA: 3'- aaGGGGUAGGCG--------------UGGGG-----UGuaGACCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 74594 | 0.66 | 0.77661 |
Target: 5'- gUCCCCGcgcuccCCGCGCccaCCCACGUCcagaccccuggGGCc -3' miRNA: 3'- aAGGGGUa-----GGCGUG---GGGUGUAGa----------CCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 92018 | 0.66 | 0.77661 |
Target: 5'- --aCCCAUCC-CACCCCcaccagggGCcgCUcGGCg -3' miRNA: 3'- aagGGGUAGGcGUGGGG--------UGuaGA-CCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 106342 | 0.66 | 0.77661 |
Target: 5'- aUgCCCgugGUCCGCugUUCGCGUuugCUGGCc -3' miRNA: 3'- aAgGGG---UAGGCGugGGGUGUA---GACCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 152495 | 0.66 | 0.77661 |
Target: 5'- aUUCCCCcaauagCCGCgcGCCCCgGCGgg-GGCg -3' miRNA: 3'- -AAGGGGua----GGCG--UGGGG-UGUagaCCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 84203 | 0.66 | 0.77661 |
Target: 5'- cUCCgCCGUgaUCGCGCCCCcCGg--GGCg -3' miRNA: 3'- aAGG-GGUA--GGCGUGGGGuGUagaCCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 87404 | 0.66 | 0.772914 |
Target: 5'- -cCCCCGguuucuuuuuuacCCGgACCCCACGUaCgggGGCc -3' miRNA: 3'- aaGGGGUa------------GGCgUGGGGUGUA-Ga--CCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 58096 | 0.66 | 0.767333 |
Target: 5'- -gCCCCGcagggucgcggCCGCccaggGCCCgGCGUCUGGg -3' miRNA: 3'- aaGGGGUa----------GGCG-----UGGGgUGUAGACCg -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 25200 | 0.66 | 0.767333 |
Target: 5'- -gCCgCGgccgCCGCGCCCCGCGgcgCUGa- -3' miRNA: 3'- aaGGgGUa---GGCGUGGGGUGUa--GACcg -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 54352 | 0.66 | 0.767333 |
Target: 5'- --gUCCAUCCuGCGCCUCGCggcGUCcGGCc -3' miRNA: 3'- aagGGGUAGG-CGUGGGGUG---UAGaCCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 6650 | 0.66 | 0.757939 |
Target: 5'- aUCCCaaCAUCCGCGCuuuCUCGCAggccgGGCg -3' miRNA: 3'- aAGGG--GUAGGCGUG---GGGUGUaga--CCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 122535 | 0.66 | 0.757939 |
Target: 5'- -gCCCCGUgCUGCAgCCCuuugACAUCgcGGCc -3' miRNA: 3'- aaGGGGUA-GGCGUgGGG----UGUAGa-CCG- -5' |
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5512 | 5' | -59 | NC_001798.1 | + | 54833 | 0.66 | 0.757939 |
Target: 5'- -aCCCCcgCCGCcgacaccaccGCCgCCGCcgcCUGGCc -3' miRNA: 3'- aaGGGGuaGGCG----------UGG-GGUGua-GACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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