miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5512 5' -59 NC_001798.1 + 34006 0.66 0.789384
Target:  5'- -cCCCCGcCCGCGCCCaCGCGguagaggaaggggaCgGGCg -3'
miRNA:   3'- aaGGGGUaGGCGUGGG-GUGUa-------------GaCCG- -5'
5512 5' -59 NC_001798.1 + 4173 0.66 0.786668
Target:  5'- cUCgUCGUCCGCGCcgagggucccgCCCGCGgcguggucugcggcgCUGGCg -3'
miRNA:   3'- aAGgGGUAGGCGUG-----------GGGUGUa--------------GACCG- -5'
5512 5' -59 NC_001798.1 + 149678 0.66 0.785761
Target:  5'- -gCCCCGggcucggggCCGC-CCUCGCGUggcgcgucuucCUGGCa -3'
miRNA:   3'- aaGGGGUa--------GGCGuGGGGUGUA-----------GACCG- -5'
5512 5' -59 NC_001798.1 + 29098 0.66 0.785761
Target:  5'- gUCCCgG-CCGCcauCCCCGCGcaUGGUa -3'
miRNA:   3'- aAGGGgUaGGCGu--GGGGUGUagACCG- -5'
5512 5' -59 NC_001798.1 + 35464 0.66 0.785761
Target:  5'- --gCCCGUCUGCuggCCCGCGgcccgucugCUGGCc -3'
miRNA:   3'- aagGGGUAGGCGug-GGGUGUa--------GACCG- -5'
5512 5' -59 NC_001798.1 + 151990 0.66 0.785761
Target:  5'- cUCCCCccCUGUcCCCCGCucUCgGGCu -3'
miRNA:   3'- aAGGGGuaGGCGuGGGGUGu-AGaCCG- -5'
5512 5' -59 NC_001798.1 + 139317 0.66 0.785761
Target:  5'- -cCCCgCGUCCGCAUcgccggcgCCCGCGcgcgCUGuGCg -3'
miRNA:   3'- aaGGG-GUAGGCGUG--------GGGUGUa---GAC-CG- -5'
5512 5' -59 NC_001798.1 + 134437 0.66 0.783029
Target:  5'- -gCCCUGUCCGCgcgcgucgccgagcACCCCggcgcGCggUUGGCg -3'
miRNA:   3'- aaGGGGUAGGCG--------------UGGGG-----UGuaGACCG- -5'
5512 5' -59 NC_001798.1 + 74594 0.66 0.77661
Target:  5'- gUCCCCGcgcuccCCGCGCccaCCCACGUCcagaccccuggGGCc -3'
miRNA:   3'- aAGGGGUa-----GGCGUG---GGGUGUAGa----------CCG- -5'
5512 5' -59 NC_001798.1 + 92018 0.66 0.77661
Target:  5'- --aCCCAUCC-CACCCCcaccagggGCcgCUcGGCg -3'
miRNA:   3'- aagGGGUAGGcGUGGGG--------UGuaGA-CCG- -5'
5512 5' -59 NC_001798.1 + 106342 0.66 0.77661
Target:  5'- aUgCCCgugGUCCGCugUUCGCGUuugCUGGCc -3'
miRNA:   3'- aAgGGG---UAGGCGugGGGUGUA---GACCG- -5'
5512 5' -59 NC_001798.1 + 152495 0.66 0.77661
Target:  5'- aUUCCCCcaauagCCGCgcGCCCCgGCGgg-GGCg -3'
miRNA:   3'- -AAGGGGua----GGCG--UGGGG-UGUagaCCG- -5'
5512 5' -59 NC_001798.1 + 84203 0.66 0.77661
Target:  5'- cUCCgCCGUgaUCGCGCCCCcCGg--GGCg -3'
miRNA:   3'- aAGG-GGUA--GGCGUGGGGuGUagaCCG- -5'
5512 5' -59 NC_001798.1 + 87404 0.66 0.772914
Target:  5'- -cCCCCGguuucuuuuuuacCCGgACCCCACGUaCgggGGCc -3'
miRNA:   3'- aaGGGGUa------------GGCgUGGGGUGUA-Ga--CCG- -5'
5512 5' -59 NC_001798.1 + 58096 0.66 0.767333
Target:  5'- -gCCCCGcagggucgcggCCGCccaggGCCCgGCGUCUGGg -3'
miRNA:   3'- aaGGGGUa----------GGCG-----UGGGgUGUAGACCg -5'
5512 5' -59 NC_001798.1 + 25200 0.66 0.767333
Target:  5'- -gCCgCGgccgCCGCGCCCCGCGgcgCUGa- -3'
miRNA:   3'- aaGGgGUa---GGCGUGGGGUGUa--GACcg -5'
5512 5' -59 NC_001798.1 + 54352 0.66 0.767333
Target:  5'- --gUCCAUCCuGCGCCUCGCggcGUCcGGCc -3'
miRNA:   3'- aagGGGUAGG-CGUGGGGUG---UAGaCCG- -5'
5512 5' -59 NC_001798.1 + 6650 0.66 0.757939
Target:  5'- aUCCCaaCAUCCGCGCuuuCUCGCAggccgGGCg -3'
miRNA:   3'- aAGGG--GUAGGCGUG---GGGUGUaga--CCG- -5'
5512 5' -59 NC_001798.1 + 122535 0.66 0.757939
Target:  5'- -gCCCCGUgCUGCAgCCCuuugACAUCgcGGCc -3'
miRNA:   3'- aaGGGGUA-GGCGUgGGG----UGUAGa-CCG- -5'
5512 5' -59 NC_001798.1 + 54833 0.66 0.757939
Target:  5'- -aCCCCcgCCGCcgacaccaccGCCgCCGCcgcCUGGCc -3'
miRNA:   3'- aaGGGGuaGGCG----------UGG-GGUGua-GACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.