miRNA display CGI


Results 61 - 80 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 48381 0.67 0.89388
Target:  5'- gCGGgGCGUGcCGCCGcGACcGCACgGGc -3'
miRNA:   3'- aGCUgCGCAC-GCGGU-UUGuCGUGgUC- -5'
5513 3' -55.6 NC_001798.1 + 28676 0.67 0.89388
Target:  5'- gCGugGCG-GCgGCCGAgGCGGuCAUCGGa -3'
miRNA:   3'- aGCugCGCaCG-CGGUU-UGUC-GUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 23927 0.67 0.89388
Target:  5'- -gGGCGCcccgGCGCCcguGugGGCGCCGa -3'
miRNA:   3'- agCUGCGca--CGCGGu--UugUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 11947 0.67 0.89388
Target:  5'- gCGGCuGCc-GCGCCAGACccAGCuCCAGg -3'
miRNA:   3'- aGCUG-CGcaCGCGGUUUG--UCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 114879 0.67 0.885048
Target:  5'- gUCGACgGgGUGCuggucaccaccgccGCCAucaAACAGCGCCu- -3'
miRNA:   3'- -AGCUG-CgCACG--------------CGGU---UUGUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 23961 0.67 0.887121
Target:  5'- gCGACGCG-GCGCa--GCAGUACg-- -3'
miRNA:   3'- aGCUGCGCaCGCGguuUGUCGUGguc -5'
5513 3' -55.6 NC_001798.1 + 54742 0.67 0.887121
Target:  5'- -gGACGCGgagGCCGAACcGgACCAGa -3'
miRNA:   3'- agCUGCGCacgCGGUUUGuCgUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 38798 0.67 0.887121
Target:  5'- cUCGACGCG-GUugGCgAGGCGG-GCCAGg -3'
miRNA:   3'- -AGCUGCGCaCG--CGgUUUGUCgUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 25494 0.67 0.89388
Target:  5'- cUCGGgccCGC-UGCGCCGcGCGGCggccuggaugcGCCAGg -3'
miRNA:   3'- -AGCU---GCGcACGCGGUuUGUCG-----------UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 53286 0.68 0.825329
Target:  5'- cCGGCGUuucugaccgGCGCCGAucGCAGCGuCCGGc -3'
miRNA:   3'- aGCUGCGca-------CGCGGUU--UGUCGU-GGUC- -5'
5513 3' -55.6 NC_001798.1 + 120704 0.68 0.825329
Target:  5'- aUCGGC-CGUcCGgCGAACGGCGCCGu -3'
miRNA:   3'- -AGCUGcGCAcGCgGUUUGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 129666 0.68 0.826179
Target:  5'- cCGACGUGcgcguggucacccggGCGCCGGGgcccCAGUACCGGc -3'
miRNA:   3'- aGCUGCGCa--------------CGCGGUUU----GUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 116798 0.68 0.832913
Target:  5'- cCGACGCGgGCGCCAAcACcGCgucgacgGCCAa -3'
miRNA:   3'- aGCUGCGCaCGCGGUU-UGuCG-------UGGUc -5'
5513 3' -55.6 NC_001798.1 + 54545 0.68 0.833746
Target:  5'- gUCGACGCGgccgaccgggGUcCCGAGCccuGCGCCGGc -3'
miRNA:   3'- -AGCUGCGCa---------CGcGGUUUGu--CGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 136880 0.68 0.84198
Target:  5'- gCGugGCGUG-GCUccggGGACAGUucuCCAGg -3'
miRNA:   3'- aGCugCGCACgCGG----UUUGUCGu--GGUC- -5'
5513 3' -55.6 NC_001798.1 + 97273 0.68 0.84198
Target:  5'- aUCG-CGCGUucggGgGCCAccuGGCGGCGCUGGa -3'
miRNA:   3'- -AGCuGCGCA----CgCGGU---UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 113628 0.68 0.84198
Target:  5'- aUCGccuGCGCGgccgGCGCCGccauguggguGGCGGCGgCGGa -3'
miRNA:   3'- -AGC---UGCGCa---CGCGGU----------UUGUCGUgGUC- -5'
5513 3' -55.6 NC_001798.1 + 134936 0.68 0.849226
Target:  5'- gUCGGCGCGUgaccuggugcgggGCGCC--GCGGcCACCc- -3'
miRNA:   3'- -AGCUGCGCA-------------CGCGGuuUGUC-GUGGuc -5'
5513 3' -55.6 NC_001798.1 + 16840 0.68 0.850021
Target:  5'- gCGAUgGCGUGCaugacGCCGGGCGGCaagguGCCAa -3'
miRNA:   3'- aGCUG-CGCACG-----CGGUUUGUCG-----UGGUc -5'
5513 3' -55.6 NC_001798.1 + 53133 0.68 0.825329
Target:  5'- cUGGCGCgGUGCcugacgccgGCCAAccucauccGCGGCGCCAa -3'
miRNA:   3'- aGCUGCG-CACG---------CGGUU--------UGUCGUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.