miRNA display CGI


Results 121 - 140 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 2422 0.71 0.691836
Target:  5'- cCGGCGUGUG-GCUGggccccggcggcuGGCGGCGCCAGc -3'
miRNA:   3'- aGCUGCGCACgCGGU-------------UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 71712 0.71 0.692849
Target:  5'- aCGGC-CGaGCGCCGcuuCAGCGCCGGc -3'
miRNA:   3'- aGCUGcGCaCGCGGUuu-GUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 9152 0.71 0.702943
Target:  5'- -gGGCGCG-GCGCCGccc-GCGCCGGg -3'
miRNA:   3'- agCUGCGCaCGCGGUuuguCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 131549 0.72 0.600754
Target:  5'- -gGACGCGaGCGCCccGACGGC-CCGGu -3'
miRNA:   3'- agCUGCGCaCGCGGu-UUGUCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 149982 0.72 0.600754
Target:  5'- -gGGCGCG-GCGCCc-GCGGaCGCCGGg -3'
miRNA:   3'- agCUGCGCaCGCGGuuUGUC-GUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 1591 0.72 0.600754
Target:  5'- cCGaaGCGCGUGCGCac-GCGGUACCGc -3'
miRNA:   3'- aGC--UGCGCACGCGguuUGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 12852 0.72 0.621257
Target:  5'- gCGugGCGUuggugGUGUCGGACAGCuCCGGc -3'
miRNA:   3'- aGCugCGCA-----CGCGGUUUGUCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 96972 0.72 0.621257
Target:  5'- cUGGCGCGgaccGCGgCGGGCGGCgggGCCAGg -3'
miRNA:   3'- aGCUGCGCa---CGCgGUUUGUCG---UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 90411 0.72 0.630498
Target:  5'- cCGGCGCGUucccGCgGCCGggcuugaGGCGGUACCAGc -3'
miRNA:   3'- aGCUGCGCA----CG-CGGU-------UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 130287 0.73 0.560085
Target:  5'- gCGuACGCGUcgaaGCGCCGAaugggcGCGGUGCCGGg -3'
miRNA:   3'- aGC-UGCGCA----CGCGGUU------UGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 21833 0.73 0.570193
Target:  5'- aUGACGCGgGCcCCGGGCagGGCGCCAGu -3'
miRNA:   3'- aGCUGCGCaCGcGGUUUG--UCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 26224 0.73 0.570193
Target:  5'- gCGACGCcaugGCGCCcGGC-GCGCCGGa -3'
miRNA:   3'- aGCUGCGca--CGCGGuUUGuCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 2793 0.73 0.580345
Target:  5'- -aGGCGCGgGCuCCGcGGCAGCGCCGGg -3'
miRNA:   3'- agCUGCGCaCGcGGU-UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 21970 0.73 0.590535
Target:  5'- aUGACGCGgGCcCCGGGCagGGCGCCAGc -3'
miRNA:   3'- aGCUGCGCaCGcGGUUUG--UCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 142188 0.74 0.530087
Target:  5'- cUGACGCG-GgGUCGAGC-GCGCCAGg -3'
miRNA:   3'- aGCUGCGCaCgCGGUUUGuCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 124338 0.74 0.529096
Target:  5'- aCGGCGCGgaaaGCGUCAuccgcccGAcCAGCGCCGGg -3'
miRNA:   3'- aGCUGCGCa---CGCGGU-------UU-GUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 8679 0.74 0.520215
Target:  5'- cCGAcgcacCGCGUGCGCCGccguCGGCGCCu- -3'
miRNA:   3'- aGCU-----GCGCACGCGGUuu--GUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 97710 0.74 0.510416
Target:  5'- cUCGGgcgcUGCGUGCG-CGAGCAGCGCgGGg -3'
miRNA:   3'- -AGCU----GCGCACGCgGUUUGUCGUGgUC- -5'
5513 3' -55.6 NC_001798.1 + 150833 0.74 0.491057
Target:  5'- ---cCGCGggGCGCCAGGgGGCGCCGGu -3'
miRNA:   3'- agcuGCGCa-CGCGGUUUgUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 78507 0.74 0.491057
Target:  5'- -aGugGUGcGCGCCAAACAGCAgCGc -3'
miRNA:   3'- agCugCGCaCGCGGUUUGUCGUgGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.