Results 61 - 80 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5513 | 3' | -55.6 | NC_001798.1 | + | 154077 | 0.69 | 0.798145 |
Target: 5'- -gGGCGCGgcacggcuggaGCGCCGGGgcgcggcCGGCGCCGGg -3' miRNA: 3'- agCUGCGCa----------CGCGGUUU-------GUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 105418 | 0.68 | 0.850021 |
Target: 5'- gCGGcCGCgGUGCGCUGGgccuGCAGCACUg- -3' miRNA: 3'- aGCU-GCG-CACGCGGUU----UGUCGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 16840 | 0.68 | 0.850021 |
Target: 5'- gCGAUgGCGUGCaugacGCCGGGCGGCaagguGCCAa -3' miRNA: 3'- aGCUG-CGCACG-----CGGUUUGUCG-----UGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 116798 | 0.68 | 0.832913 |
Target: 5'- cCGACGCGgGCGCCAAcACcGCgucgacgGCCAa -3' miRNA: 3'- aGCUGCGCaCGCGGUU-UGuCG-------UGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 134936 | 0.68 | 0.849226 |
Target: 5'- gUCGGCGCGUgaccuggugcgggGCGCC--GCGGcCACCc- -3' miRNA: 3'- -AGCUGCGCA-------------CGCGGuuUGUC-GUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 54545 | 0.68 | 0.833746 |
Target: 5'- gUCGACGCGgccgaccgggGUcCCGAGCccuGCGCCGGc -3' miRNA: 3'- -AGCUGCGCa---------CGcGGUUUGu--CGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 113628 | 0.68 | 0.84198 |
Target: 5'- aUCGccuGCGCGgccgGCGCCGccauguggguGGCGGCGgCGGa -3' miRNA: 3'- -AGC---UGCGCa---CGCGGU----------UUGUCGUgGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 97273 | 0.68 | 0.84198 |
Target: 5'- aUCG-CGCGUucggGgGCCAccuGGCGGCGCUGGa -3' miRNA: 3'- -AGCuGCGCA----CgCGGU---UUGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 136880 | 0.68 | 0.84198 |
Target: 5'- gCGugGCGUG-GCUccggGGACAGUucuCCAGg -3' miRNA: 3'- aGCugCGCACgCGG----UUUGUCGu--GGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 23746 | 0.68 | 0.825329 |
Target: 5'- cCGACGCGgccuccgGCGCCuucuACGcGCGCUAc -3' miRNA: 3'- aGCUGCGCa------CGCGGuu--UGU-CGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 3217 | 0.68 | 0.825329 |
Target: 5'- -gGGCGCG-GCGCuCAGGC-GCcCCAGg -3' miRNA: 3'- agCUGCGCaCGCG-GUUUGuCGuGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 35145 | 0.68 | 0.816734 |
Target: 5'- -gGGCGCGccggUGCGCgGAGCAGCcuuccuucuCCGGa -3' miRNA: 3'- agCUGCGC----ACGCGgUUUGUCGu--------GGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 120704 | 0.68 | 0.825329 |
Target: 5'- aUCGGC-CGUcCGgCGAACGGCGCCGu -3' miRNA: 3'- -AGCUGcGCAcGCgGUUUGUCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 53286 | 0.68 | 0.825329 |
Target: 5'- cCGGCGUuucugaccgGCGCCGAucGCAGCGuCCGGc -3' miRNA: 3'- aGCUGCGca-------CGCGGUU--UGUCGU-GGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 53133 | 0.68 | 0.825329 |
Target: 5'- cUGGCGCgGUGCcugacgccgGCCAAccucauccGCGGCGCCAa -3' miRNA: 3'- aGCUGCG-CACG---------CGGUU--------UGUCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 40161 | 0.68 | 0.814122 |
Target: 5'- -gGGCGCGUGUcggaagagagugGCCGgguccgaaucgaggAGCGGCACCGa -3' miRNA: 3'- agCUGCGCACG------------CGGU--------------UUGUCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 51252 | 0.68 | 0.825329 |
Target: 5'- cCGuuCGCG-GaCGCCgGGACAGCGCCAu -3' miRNA: 3'- aGCu-GCGCaC-GCGG-UUUGUCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 129666 | 0.68 | 0.826179 |
Target: 5'- cCGACGUGcgcguggucacccggGCGCCGGGgcccCAGUACCGGc -3' miRNA: 3'- aGCUGCGCa--------------CGCGGUUU----GUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 139333 | 0.67 | 0.865501 |
Target: 5'- cCGGCGCccgcgcgcgcuGUGCgGCCAuGGCGGCGuCCGGc -3' miRNA: 3'- aGCUGCG-----------CACG-CGGU-UUGUCGU-GGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 34951 | 0.67 | 0.872926 |
Target: 5'- gCGaACGCGcgGCGCCGgagggGGCGGcCGCCGa -3' miRNA: 3'- aGC-UGCGCa-CGCGGU-----UUGUC-GUGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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