Results 81 - 100 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5513 | 3' | -55.6 | NC_001798.1 | + | 79359 | 0.67 | 0.89388 |
Target: 5'- --aGCGCGUaCGCCAGGgcCGGCgGCCAGa -3' miRNA: 3'- agcUGCGCAcGCGGUUU--GUCG-UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 81730 | 0.67 | 0.89388 |
Target: 5'- cCG-CGCGUGCgcaggucccGCCGGACGcGUGCCAa -3' miRNA: 3'- aGCuGCGCACG---------CGGUUUGU-CGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 138552 | 0.67 | 0.89652 |
Target: 5'- aUCGAagaccagGCG-GuCGCCGGuccacaggggggggcACAGCACCAGg -3' miRNA: 3'- -AGCUg------CGCaC-GCGGUU---------------UGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 80261 | 0.67 | 0.872926 |
Target: 5'- uUCGgcACGCG-GCugGCCGAcUGGCGCCGGg -3' miRNA: 3'- -AGC--UGCGCaCG--CGGUUuGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 114287 | 0.67 | 0.872926 |
Target: 5'- cCGugGCGUGCGUgu----GCACCAa -3' miRNA: 3'- aGCugCGCACGCGguuuguCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 97817 | 0.67 | 0.880134 |
Target: 5'- gCGGCGCGcgcgcgcuucUGCGCCcuGACGGCggGCgCGGg -3' miRNA: 3'- aGCUGCGC----------ACGCGGu-UUGUCG--UG-GUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 102119 | 0.67 | 0.880134 |
Target: 5'- gCGcGCGCauGUGCGCCAGuucCuGCugCAGg -3' miRNA: 3'- aGC-UGCG--CACGCGGUUu--GuCGugGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 25946 | 0.67 | 0.880134 |
Target: 5'- cCGGCa-GUGCGCCGugcgcuggccGGCGGCGCgGGa -3' miRNA: 3'- aGCUGcgCACGCGGU----------UUGUCGUGgUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 23927 | 0.67 | 0.89388 |
Target: 5'- -gGGCGCcccgGCGCCcguGugGGCGCCGa -3' miRNA: 3'- agCUGCGca--CGCGGu--UugUCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 38798 | 0.67 | 0.887121 |
Target: 5'- cUCGACGCG-GUugGCgAGGCGG-GCCAGg -3' miRNA: 3'- -AGCUGCGCaCG--CGgUUUGUCgUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 70066 | 0.67 | 0.857864 |
Target: 5'- gCGcCGCGU-CGCCGAGCGcGCacGCCGGu -3' miRNA: 3'- aGCuGCGCAcGCGGUUUGU-CG--UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 5297 | 0.67 | 0.857864 |
Target: 5'- aUCGACGCcgccGCGCCc--CGGCucGCCGGg -3' miRNA: 3'- -AGCUGCGca--CGCGGuuuGUCG--UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 54742 | 0.67 | 0.887121 |
Target: 5'- -gGACGCGgagGCCGAACcGgACCAGa -3' miRNA: 3'- agCUGCGCacgCGGUUUGuCgUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 23961 | 0.67 | 0.887121 |
Target: 5'- gCGACGCG-GCGCa--GCAGUACg-- -3' miRNA: 3'- aGCUGCGCaCGCGguuUGUCGUGguc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 114879 | 0.67 | 0.885048 |
Target: 5'- gUCGACgGgGUGCuggucaccaccgccGCCAucaAACAGCGCCu- -3' miRNA: 3'- -AGCUG-CgCACG--------------CGGU---UUGUCGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 144332 | 0.67 | 0.880134 |
Target: 5'- gCGGCGuCGcauCGCCcGACAGCcCCAGg -3' miRNA: 3'- aGCUGC-GCac-GCGGuUUGUCGuGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 139333 | 0.67 | 0.865501 |
Target: 5'- cCGGCGCccgcgcgcgcuGUGCgGCCAuGGCGGCGuCCGGc -3' miRNA: 3'- aGCUGCG-----------CACG-CGGU-UUGUCGU-GGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 34951 | 0.67 | 0.872926 |
Target: 5'- gCGaACGCGcgGCGCCGgagggGGCGGcCGCCGa -3' miRNA: 3'- aGC-UGCGCa-CGCGGU-----UUGUC-GUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 25494 | 0.67 | 0.89388 |
Target: 5'- cUCGGgccCGC-UGCGCCGcGCGGCggccuggaugcGCCAGg -3' miRNA: 3'- -AGCU---GCGcACGCGGUuUGUCG-----------UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 11947 | 0.67 | 0.89388 |
Target: 5'- gCGGCuGCc-GCGCCAGACccAGCuCCAGg -3' miRNA: 3'- aGCUG-CGcaCGCGGUUUG--UCGuGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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