miRNA display CGI


Results 101 - 120 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 102119 0.67 0.880134
Target:  5'- gCGcGCGCauGUGCGCCAGuucCuGCugCAGg -3'
miRNA:   3'- aGC-UGCG--CACGCGGUUu--GuCGugGUC- -5'
5513 3' -55.6 NC_001798.1 + 97817 0.67 0.880134
Target:  5'- gCGGCGCGcgcgcgcuucUGCGCCcuGACGGCggGCgCGGg -3'
miRNA:   3'- aGCUGCGC----------ACGCGGu-UUGUCG--UG-GUC- -5'
5513 3' -55.6 NC_001798.1 + 114287 0.67 0.872926
Target:  5'- cCGugGCGUGCGUgu----GCACCAa -3'
miRNA:   3'- aGCugCGCACGCGguuuguCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 1375 0.67 0.872926
Target:  5'- aCGGCGUc-GCGCCc--CAGCGCCAc -3'
miRNA:   3'- aGCUGCGcaCGCGGuuuGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 48381 0.67 0.89388
Target:  5'- gCGGgGCGUGcCGCCGcGACcGCACgGGc -3'
miRNA:   3'- aGCUgCGCAC-GCGGU-UUGuCGUGgUC- -5'
5513 3' -55.6 NC_001798.1 + 147985 0.66 0.929503
Target:  5'- -aGGCGCGUGC-CCGGccACAGC-CguGg -3'
miRNA:   3'- agCUGCGCACGcGGUU--UGUCGuGguC- -5'
5513 3' -55.6 NC_001798.1 + 130781 0.66 0.929503
Target:  5'- aCGAUG-GUGCGUC----GGCGCCGGg -3'
miRNA:   3'- aGCUGCgCACGCGGuuugUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 111835 0.66 0.924163
Target:  5'- cUGGCGCGgggcgggaaUGcCGUCAAACAGgccgcuCACCAGg -3'
miRNA:   3'- aGCUGCGC---------AC-GCGGUUUGUC------GUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 51166 0.66 0.924163
Target:  5'- cCGACGCGcguccgagGC-CCGGGCGGCggcgcccccccGCCGGg -3'
miRNA:   3'- aGCUGCGCa-------CGcGGUUUGUCG-----------UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 24750 0.66 0.924163
Target:  5'- cCGACGCGccccgccugcGCGCCuGGCuGCGCgAGc -3'
miRNA:   3'- aGCUGCGCa---------CGCGGuUUGuCGUGgUC- -5'
5513 3' -55.6 NC_001798.1 + 138426 0.66 0.924163
Target:  5'- cUCGcuguCGCucuUGCGCCccAACAGCACCu- -3'
miRNA:   3'- -AGCu---GCGc--ACGCGGu-UUGUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 58124 0.66 0.918012
Target:  5'- cCGGCGUcUGgGUCcuugugaAGGCGGCGCCGGa -3'
miRNA:   3'- aGCUGCGcACgCGG-------UUUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 2844 0.66 0.912763
Target:  5'- aCGGCGCGcacgGCgGCCAcGGCGGCcucgcugccGCCGGc -3'
miRNA:   3'- aGCUGCGCa---CG-CGGU-UUGUCG---------UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 149394 0.66 0.912763
Target:  5'- cCGACGCGggggGCGUCGggUAGUcgggggGCCu- -3'
miRNA:   3'- aGCUGCGCa---CGCGGUuuGUCG------UGGuc -5'
5513 3' -55.6 NC_001798.1 + 78391 0.66 0.912763
Target:  5'- cUGGuCGCGUGCGC--GGCGGCGuuGGa -3'
miRNA:   3'- aGCU-GCGCACGCGguUUGUCGUggUC- -5'
5513 3' -55.6 NC_001798.1 + 24435 0.66 0.912763
Target:  5'- aCGAgCGCGcgGUGCCcgccggcuACGGCGCCGc -3'
miRNA:   3'- aGCU-GCGCa-CGCGGuu------UGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 24041 0.66 0.912763
Target:  5'- cCG-CGCGUgGCGCCcggGGACguGGCGCUGGa -3'
miRNA:   3'- aGCuGCGCA-CGCGG---UUUG--UCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 149649 0.66 0.912763
Target:  5'- --aGCGCGUGagGCCG---GGCGCCGGg -3'
miRNA:   3'- agcUGCGCACg-CGGUuugUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 113500 0.66 0.912763
Target:  5'- gCGGCGCGgcccugUGCGCCcugguGGCGGcCGCCc- -3'
miRNA:   3'- aGCUGCGC------ACGCGGu----UUGUC-GUGGuc -5'
5513 3' -55.6 NC_001798.1 + 105215 0.66 0.912763
Target:  5'- aCGGCGC-UGCcCCGuccGCAGCGCCc- -3'
miRNA:   3'- aGCUGCGcACGcGGUu--UGUCGUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.