Results 141 - 147 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5513 | 3' | -55.6 | NC_001798.1 | + | 149394 | 0.66 | 0.912763 |
Target: 5'- cCGACGCGggggGCGUCGggUAGUcgggggGCCu- -3' miRNA: 3'- aGCUGCGCa---CGCGGUuuGUCG------UGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 78391 | 0.66 | 0.912763 |
Target: 5'- cUGGuCGCGUGCGC--GGCGGCGuuGGa -3' miRNA: 3'- aGCU-GCGCACGCGguUUGUCGUggUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 24435 | 0.66 | 0.912763 |
Target: 5'- aCGAgCGCGcgGUGCCcgccggcuACGGCGCCGc -3' miRNA: 3'- aGCU-GCGCa-CGCGGuu------UGUCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 24041 | 0.66 | 0.912763 |
Target: 5'- cCG-CGCGUgGCGCCcggGGACguGGCGCUGGa -3' miRNA: 3'- aGCuGCGCA-CGCGG---UUUG--UCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 149649 | 0.66 | 0.912763 |
Target: 5'- --aGCGCGUGagGCCG---GGCGCCGGg -3' miRNA: 3'- agcUGCGCACg-CGGUuugUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 113500 | 0.66 | 0.912763 |
Target: 5'- gCGGCGCGgcccugUGCGCCcugguGGCGGcCGCCc- -3' miRNA: 3'- aGCUGCGC------ACGCGGu----UUGUC-GUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 25088 | 0.66 | 0.900409 |
Target: 5'- -gGGCGC---CGCCGGGCGGCGCCc- -3' miRNA: 3'- agCUGCGcacGCGGUUUGUCGUGGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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