miRNA display CGI


Results 81 - 100 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 131930 0.67 0.864746
Target:  5'- gUCGACGCGUugaugcuGCGCCu-GCuGCGCa-- -3'
miRNA:   3'- -AGCUGCGCA-------CGCGGuuUGuCGUGguc -5'
5513 3' -55.6 NC_001798.1 + 55512 0.67 0.865501
Target:  5'- -gGACGC--GCGCCucACGGCAaccCCAGg -3'
miRNA:   3'- agCUGCGcaCGCGGuuUGUCGU---GGUC- -5'
5513 3' -55.6 NC_001798.1 + 23482 0.67 0.865501
Target:  5'- aCGACGCcgcccGCGCCcccgcCAGCGCCGc -3'
miRNA:   3'- aGCUGCGca---CGCGGuuu--GUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 139333 0.67 0.865501
Target:  5'- cCGGCGCccgcgcgcgcuGUGCgGCCAuGGCGGCGuCCGGc -3'
miRNA:   3'- aGCUGCG-----------CACG-CGGU-UUGUCGU-GGUC- -5'
5513 3' -55.6 NC_001798.1 + 134974 0.67 0.865501
Target:  5'- aUGcCGCGUGCcugggggccugGCCcgcGGugGGCGCCAGg -3'
miRNA:   3'- aGCuGCGCACG-----------CGG---UUugUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 114287 0.67 0.872926
Target:  5'- cCGugGCGUGCGUgu----GCACCAa -3'
miRNA:   3'- aGCugCGCACGCGguuuguCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 34951 0.67 0.872926
Target:  5'- gCGaACGCGcgGCGCCGgagggGGCGGcCGCCGa -3'
miRNA:   3'- aGC-UGCGCa-CGCGGU-----UUGUC-GUGGUc -5'
5513 3' -55.6 NC_001798.1 + 80261 0.67 0.872926
Target:  5'- uUCGgcACGCG-GCugGCCGAcUGGCGCCGGg -3'
miRNA:   3'- -AGC--UGCGCaCG--CGGUUuGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 1375 0.67 0.872926
Target:  5'- aCGGCGUc-GCGCCc--CAGCGCCAc -3'
miRNA:   3'- aGCUGCGcaCGCGGuuuGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 25946 0.67 0.880134
Target:  5'- cCGGCa-GUGCGCCGugcgcuggccGGCGGCGCgGGa -3'
miRNA:   3'- aGCUGcgCACGCGGU----------UUGUCGUGgUC- -5'
5513 3' -55.6 NC_001798.1 + 144332 0.67 0.880134
Target:  5'- gCGGCGuCGcauCGCCcGACAGCcCCAGg -3'
miRNA:   3'- aGCUGC-GCac-GCGGuUUGUCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 102119 0.67 0.880134
Target:  5'- gCGcGCGCauGUGCGCCAGuucCuGCugCAGg -3'
miRNA:   3'- aGC-UGCG--CACGCGGUUu--GuCGugGUC- -5'
5513 3' -55.6 NC_001798.1 + 97817 0.67 0.880134
Target:  5'- gCGGCGCGcgcgcgcuucUGCGCCcuGACGGCggGCgCGGg -3'
miRNA:   3'- aGCUGCGC----------ACGCGGu-UUGUCG--UG-GUC- -5'
5513 3' -55.6 NC_001798.1 + 114879 0.67 0.885048
Target:  5'- gUCGACgGgGUGCuggucaccaccgccGCCAucaAACAGCGCCu- -3'
miRNA:   3'- -AGCUG-CgCACG--------------CGGU---UUGUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 23961 0.67 0.887121
Target:  5'- gCGACGCG-GCGCa--GCAGUACg-- -3'
miRNA:   3'- aGCUGCGCaCGCGguuUGUCGUGguc -5'
5513 3' -55.6 NC_001798.1 + 54742 0.67 0.887121
Target:  5'- -gGACGCGgagGCCGAACcGgACCAGa -3'
miRNA:   3'- agCUGCGCacgCGGUUUGuCgUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 38798 0.67 0.887121
Target:  5'- cUCGACGCG-GUugGCgAGGCGG-GCCAGg -3'
miRNA:   3'- -AGCUGCGCaCG--CGgUUUGUCgUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 11947 0.67 0.89388
Target:  5'- gCGGCuGCc-GCGCCAGACccAGCuCCAGg -3'
miRNA:   3'- aGCUG-CGcaCGCGGUUUG--UCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 23927 0.67 0.89388
Target:  5'- -gGGCGCcccgGCGCCcguGugGGCGCCGa -3'
miRNA:   3'- agCUGCGca--CGCGGu--UugUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 28676 0.67 0.89388
Target:  5'- gCGugGCG-GCgGCCGAgGCGGuCAUCGGa -3'
miRNA:   3'- aGCugCGCaCG-CGGUU-UGUC-GUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.