Results 101 - 120 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5513 | 3' | -55.6 | NC_001798.1 | + | 23927 | 0.67 | 0.89388 |
Target: 5'- -gGGCGCcccgGCGCCcguGugGGCGCCGa -3' miRNA: 3'- agCUGCGca--CGCGGu--UugUCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 11947 | 0.67 | 0.89388 |
Target: 5'- gCGGCuGCc-GCGCCAGACccAGCuCCAGg -3' miRNA: 3'- aGCUG-CGcaCGCGGUUUG--UCGuGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 25494 | 0.67 | 0.89388 |
Target: 5'- cUCGGgccCGC-UGCGCCGcGCGGCggccuggaugcGCCAGg -3' miRNA: 3'- -AGCU---GCGcACGCGGUuUGUCG-----------UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 48381 | 0.67 | 0.89388 |
Target: 5'- gCGGgGCGUGcCGCCGcGACcGCACgGGc -3' miRNA: 3'- aGCUgCGCAC-GCGGU-UUGuCGUGgUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 138552 | 0.67 | 0.89652 |
Target: 5'- aUCGAagaccagGCG-GuCGCCGGuccacaggggggggcACAGCACCAGg -3' miRNA: 3'- -AGCUg------CGCaC-GCGGUU---------------UGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 153687 | 0.66 | 0.900409 |
Target: 5'- -gGACGCGgggGcCGCCGccGGCGcaggcucaggcGCGCCAGg -3' miRNA: 3'- agCUGCGCa--C-GCGGU--UUGU-----------CGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 25088 | 0.66 | 0.900409 |
Target: 5'- -gGGCGC---CGCCGGGCGGCGCCc- -3' miRNA: 3'- agCUGCGcacGCGGUUUGUCGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 134168 | 0.66 | 0.906704 |
Target: 5'- cCGuCGCGgccgcccGCGCCGcGACGGCcCCGGc -3' miRNA: 3'- aGCuGCGCa------CGCGGU-UUGUCGuGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 1475 | 0.66 | 0.906704 |
Target: 5'- cCGGCGCGccggGCGCCAuGGCGuCGCCc- -3' miRNA: 3'- aGCUGCGCa---CGCGGU-UUGUcGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 136246 | 0.66 | 0.906704 |
Target: 5'- cCG-CGUGUGCGCgCGuccguauuuacuGGCAcGCGCCGGu -3' miRNA: 3'- aGCuGCGCACGCG-GU------------UUGU-CGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 79853 | 0.66 | 0.906704 |
Target: 5'- gCGACGUGggGCGCCucgauggacGCGGCgGCCGa -3' miRNA: 3'- aGCUGCGCa-CGCGGuu-------UGUCG-UGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 19284 | 0.66 | 0.906704 |
Target: 5'- aCGGCGUGgugGUGCC---CGGCgACCGGg -3' miRNA: 3'- aGCUGCGCa--CGCGGuuuGUCG-UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 52345 | 0.66 | 0.91157 |
Target: 5'- gUCGugGCGgccgagcacgagGCGCUggGCGaCACCGc -3' miRNA: 3'- -AGCugCGCa-----------CGCGGuuUGUcGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 3509 | 0.66 | 0.912168 |
Target: 5'- aCGGCGgccgccaCGUGCGCCAggccccagccgaAGCGGCccGCCGc -3' miRNA: 3'- aGCUGC-------GCACGCGGU------------UUGUCG--UGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 149394 | 0.66 | 0.912763 |
Target: 5'- cCGACGCGggggGCGUCGggUAGUcgggggGCCu- -3' miRNA: 3'- aGCUGCGCa---CGCGGUuuGUCG------UGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 78391 | 0.66 | 0.912763 |
Target: 5'- cUGGuCGCGUGCGC--GGCGGCGuuGGa -3' miRNA: 3'- aGCU-GCGCACGCGguUUGUCGUggUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 24435 | 0.66 | 0.912763 |
Target: 5'- aCGAgCGCGcgGUGCCcgccggcuACGGCGCCGc -3' miRNA: 3'- aGCU-GCGCa-CGCGGuu------UGUCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 24041 | 0.66 | 0.912763 |
Target: 5'- cCG-CGCGUgGCGCCcggGGACguGGCGCUGGa -3' miRNA: 3'- aGCuGCGCA-CGCGG---UUUG--UCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 149649 | 0.66 | 0.912763 |
Target: 5'- --aGCGCGUGagGCCG---GGCGCCGGg -3' miRNA: 3'- agcUGCGCACg-CGGUuugUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 105215 | 0.66 | 0.912763 |
Target: 5'- aCGGCGC-UGCcCCGuccGCAGCGCCc- -3' miRNA: 3'- aGCUGCGcACGcGGUu--UGUCGUGGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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