Results 121 - 140 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5513 | 3' | -55.6 | NC_001798.1 | + | 105215 | 0.66 | 0.912763 |
Target: 5'- aCGGCGC-UGCcCCGuccGCAGCGCCc- -3' miRNA: 3'- aGCUGCGcACGcGGUu--UGUCGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 62449 | 0.66 | 0.912763 |
Target: 5'- aCGuCGCcgGUGgGCCGcgcGACGGCGCCc- -3' miRNA: 3'- aGCuGCG--CACgCGGU---UUGUCGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 20283 | 0.66 | 0.912763 |
Target: 5'- aCGuGCGCG-GCcCCAGGCGGguCCGGc -3' miRNA: 3'- aGC-UGCGCaCGcGGUUUGUCguGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 2844 | 0.66 | 0.912763 |
Target: 5'- aCGGCGCGcacgGCgGCCAcGGCGGCcucgcugccGCCGGc -3' miRNA: 3'- aGCUGCGCa---CG-CGGU-UUGUCG---------UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 58124 | 0.66 | 0.918012 |
Target: 5'- cCGGCGUcUGgGUCcuugugaAGGCGGCGCCGGa -3' miRNA: 3'- aGCUGCGcACgCGG-------UUUGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 97464 | 0.66 | 0.918583 |
Target: 5'- cUGGCGCGgcuggGgGCCG-GCGGCgcgACCGGg -3' miRNA: 3'- aGCUGCGCa----CgCGGUuUGUCG---UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 134444 | 0.66 | 0.918583 |
Target: 5'- cCGcGCGCGU-CGCCGAGCaccccGGCGCgCGGu -3' miRNA: 3'- aGC-UGCGCAcGCGGUUUG-----UCGUG-GUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 65534 | 0.66 | 0.924163 |
Target: 5'- -gGugGCGgaucagGCGCUugaaGAACAGguCCGGc -3' miRNA: 3'- agCugCGCa-----CGCGG----UUUGUCguGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 153071 | 0.66 | 0.924163 |
Target: 5'- cUGGgGCGggcggaGCgGCgGGGCGGCGCCGGg -3' miRNA: 3'- aGCUgCGCa-----CG-CGgUUUGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 150191 | 0.66 | 0.924163 |
Target: 5'- ---cCGCG-GCGUgGggGGCGGCACCGGg -3' miRNA: 3'- agcuGCGCaCGCGgU--UUGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 122897 | 0.66 | 0.924163 |
Target: 5'- cCGACGCccacuacGCGUUugacuacuACAGCACCAGc -3' miRNA: 3'- aGCUGCGca-----CGCGGuu------UGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 111835 | 0.66 | 0.924163 |
Target: 5'- cUGGCGCGgggcgggaaUGcCGUCAAACAGgccgcuCACCAGg -3' miRNA: 3'- aGCUGCGC---------AC-GCGGUUUGUC------GUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 51166 | 0.66 | 0.924163 |
Target: 5'- cCGACGCGcguccgagGC-CCGGGCGGCggcgcccccccGCCGGg -3' miRNA: 3'- aGCUGCGCa-------CGcGGUUUGUCG-----------UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 24750 | 0.66 | 0.924163 |
Target: 5'- cCGACGCGccccgccugcGCGCCuGGCuGCGCgAGc -3' miRNA: 3'- aGCUGCGCa---------CGCGGuUUGuCGUGgUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 138426 | 0.66 | 0.924163 |
Target: 5'- cUCGcuguCGCucuUGCGCCccAACAGCACCu- -3' miRNA: 3'- -AGCu---GCGc--ACGCGGu-UUGUCGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 115853 | 0.66 | 0.924163 |
Target: 5'- cUCGGCGUugGcCGCCAcGCcauGGCGCCGGc -3' miRNA: 3'- -AGCUGCGcaC-GCGGUuUG---UCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 108639 | 0.66 | 0.924163 |
Target: 5'- aCGACGgG-GCGaCCGAGaGGCAcCCGGa -3' miRNA: 3'- aGCUGCgCaCGC-GGUUUgUCGU-GGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 36306 | 0.66 | 0.924163 |
Target: 5'- gUGugGCGgcgggGCGCgGGcCGGgGCCGGg -3' miRNA: 3'- aGCugCGCa----CGCGgUUuGUCgUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 78154 | 0.66 | 0.924163 |
Target: 5'- aCGA-GCGUGC-CCGGcCuGCGCCGGu -3' miRNA: 3'- aGCUgCGCACGcGGUUuGuCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 135341 | 0.66 | 0.926328 |
Target: 5'- -gGACGCGUGCGaCGccugccccgcgcuccGGCAGCugCu- -3' miRNA: 3'- agCUGCGCACGCgGU---------------UUGUCGugGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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