Results 101 - 120 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5513 | 3' | -55.6 | NC_001798.1 | + | 24543 | 0.69 | 0.76192 |
Target: 5'- aCGACGaCG-GCGCCGgcggugguGGCGGCgGCCGGc -3' miRNA: 3'- aGCUGC-GCaCGCGGU--------UUGUCG-UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 132678 | 0.69 | 0.76192 |
Target: 5'- gCGACGCGUcgcaCGCCGAcGCGGCG-CAGg -3' miRNA: 3'- aGCUGCGCAc---GCGGUU-UGUCGUgGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 34864 | 0.69 | 0.76192 |
Target: 5'- -gGACGCcuuccgcccgGCGCCGGGCGGCuacCCGGg -3' miRNA: 3'- agCUGCGca--------CGCGGUUUGUCGu--GGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 30544 | 0.69 | 0.76192 |
Target: 5'- gCGACGUGUGUGCCGuguGCAcGgACgAGa -3' miRNA: 3'- aGCUGCGCACGCGGUu--UGU-CgUGgUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 26068 | 0.69 | 0.760965 |
Target: 5'- cCGACGCGccgccgcUGCGCCucugccGCGGgGCCAa -3' miRNA: 3'- aGCUGCGC-------ACGCGGuu----UGUCgUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 97632 | 0.69 | 0.760965 |
Target: 5'- gCGACGCGgGcCGCCGcgGACgugcgggAGCGCCGGc -3' miRNA: 3'- aGCUGCGCaC-GCGGU--UUG-------UCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 1293 | 0.7 | 0.742625 |
Target: 5'- -gGGCGCGU-CGCCGucgggcucgAGCAGCGCCc- -3' miRNA: 3'- agCUGCGCAcGCGGU---------UUGUCGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 111800 | 0.7 | 0.742625 |
Target: 5'- aCGACaucCGUGCGCCGGucGCGgGCGuCCAGg -3' miRNA: 3'- aGCUGc--GCACGCGGUU--UGU-CGU-GGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 153371 | 0.7 | 0.722941 |
Target: 5'- cUCGGC-CGc-CGCCAcGCGGCGCCGGa -3' miRNA: 3'- -AGCUGcGCacGCGGUuUGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 31206 | 0.7 | 0.712977 |
Target: 5'- cCGGCGCccccugGCGCCccgcgGAGCAGCAgCAGc -3' miRNA: 3'- aGCUGCGca----CGCGG-----UUUGUCGUgGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 84997 | 0.7 | 0.712977 |
Target: 5'- -gGACGCGUGCGCCccGCucgACCGGc -3' miRNA: 3'- agCUGCGCACGCGGuuUGucgUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 36500 | 0.7 | 0.712977 |
Target: 5'- gCGACGCGgGCgGCCGGgcgggggcgcGCGGCgGCCGGg -3' miRNA: 3'- aGCUGCGCaCG-CGGUU----------UGUCG-UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 9152 | 0.71 | 0.702943 |
Target: 5'- -gGGCGCG-GCGCCGccc-GCGCCGGg -3' miRNA: 3'- agCUGCGCaCGCGGUuuguCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 71712 | 0.71 | 0.692849 |
Target: 5'- aCGGC-CGaGCGCCGcuuCAGCGCCGGc -3' miRNA: 3'- aGCUGcGCaCGCGGUuu-GUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 2422 | 0.71 | 0.691836 |
Target: 5'- cCGGCGUGUG-GCUGggccccggcggcuGGCGGCGCCAGc -3' miRNA: 3'- aGCUGCGCACgCGGU-------------UUGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 63744 | 0.71 | 0.68981 |
Target: 5'- -aGGCGCGgcGCGCCuggucguuguugugAAAgAGCACCAGc -3' miRNA: 3'- agCUGCGCa-CGCGG--------------UUUgUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 1508 | 0.71 | 0.672517 |
Target: 5'- cCGAgGCGgcgGCccgGCCGucCAGCGCCGGg -3' miRNA: 3'- aGCUgCGCa--CG---CGGUuuGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 1264 | 0.71 | 0.662297 |
Target: 5'- gCGucCGCGU-CGUCGcGCAGCACCAGc -3' miRNA: 3'- aGCu-GCGCAcGCGGUuUGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 153735 | 0.71 | 0.662297 |
Target: 5'- gUCGugGUGcGCaGCCG--UAGCGCCAGg -3' miRNA: 3'- -AGCugCGCaCG-CGGUuuGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 124086 | 0.71 | 0.662297 |
Target: 5'- gCGGCGCcUGCGCCccGACGGC-CCAc -3' miRNA: 3'- aGCUGCGcACGCGGu-UUGUCGuGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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