miRNA display CGI


Results 81 - 100 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 78507 0.74 0.491057
Target:  5'- -aGugGUGcGCGCCAAACAGCAgCGc -3'
miRNA:   3'- agCugCGCaCGCGGUUUGUCGUgGUc -5'
5513 3' -55.6 NC_001798.1 + 79359 0.67 0.89388
Target:  5'- --aGCGCGUaCGCCAGGgcCGGCgGCCAGa -3'
miRNA:   3'- agcUGCGCAcGCGGUUU--GUCG-UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 79853 0.66 0.906704
Target:  5'- gCGACGUGggGCGCCucgauggacGCGGCgGCCGa -3'
miRNA:   3'- aGCUGCGCa-CGCGGuu-------UGUCG-UGGUc -5'
5513 3' -55.6 NC_001798.1 + 80261 0.67 0.872926
Target:  5'- uUCGgcACGCG-GCugGCCGAcUGGCGCCGGg -3'
miRNA:   3'- -AGC--UGCGCaCG--CGGUUuGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 81730 0.67 0.89388
Target:  5'- cCG-CGCGUGCgcaggucccGCCGGACGcGUGCCAa -3'
miRNA:   3'- aGCuGCGCACG---------CGGUUUGU-CGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 84997 0.7 0.712977
Target:  5'- -gGACGCGUGCGCCccGCucgACCGGc -3'
miRNA:   3'- agCUGCGCACGCGGuuUGucgUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 85151 0.66 0.929503
Target:  5'- aCGAgGCccuGUGCGCCGAGCuccuGGCgGCCu- -3'
miRNA:   3'- aGCUgCG---CACGCGGUUUG----UCG-UGGuc -5'
5513 3' -55.6 NC_001798.1 + 90411 0.72 0.630498
Target:  5'- cCGGCGCGUucccGCgGCCGggcuugaGGCGGUACCAGc -3'
miRNA:   3'- aGCUGCGCA----CG-CGGU-------UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 93306 0.69 0.80797
Target:  5'- gCGcCGCGggccucguggGCGCCAugguguuCAGCACCAa -3'
miRNA:   3'- aGCuGCGCa---------CGCGGUuu-----GUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 96972 0.72 0.621257
Target:  5'- cUGGCGCGgaccGCGgCGGGCGGCgggGCCAGg -3'
miRNA:   3'- aGCUGCGCa---CGCgGUUUGUCG---UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 97273 0.68 0.84198
Target:  5'- aUCG-CGCGUucggGgGCCAccuGGCGGCGCUGGa -3'
miRNA:   3'- -AGCuGCGCA----CgCGGU---UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 97464 0.66 0.918583
Target:  5'- cUGGCGCGgcuggGgGCCG-GCGGCgcgACCGGg -3'
miRNA:   3'- aGCUGCGCa----CgCGGUuUGUCG---UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 97632 0.69 0.760965
Target:  5'- gCGACGCGgGcCGCCGcgGACgugcgggAGCGCCGGc -3'
miRNA:   3'- aGCUGCGCaC-GCGGU--UUG-------UCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 97710 0.74 0.510416
Target:  5'- cUCGGgcgcUGCGUGCG-CGAGCAGCGCgGGg -3'
miRNA:   3'- -AGCU----GCGCACGCgGUUUGUCGUGgUC- -5'
5513 3' -55.6 NC_001798.1 + 97817 0.67 0.880134
Target:  5'- gCGGCGCGcgcgcgcuucUGCGCCcuGACGGCggGCgCGGg -3'
miRNA:   3'- aGCUGCGC----------ACGCGGu-UUGUCG--UG-GUC- -5'
5513 3' -55.6 NC_001798.1 + 102119 0.67 0.880134
Target:  5'- gCGcGCGCauGUGCGCCAGuucCuGCugCAGg -3'
miRNA:   3'- aGC-UGCG--CACGCGGUUu--GuCGugGUC- -5'
5513 3' -55.6 NC_001798.1 + 102728 0.69 0.780751
Target:  5'- aCGACGCGacuugacGCGCaCGGACGGCgACCu- -3'
miRNA:   3'- aGCUGCGCa------CGCG-GUUUGUCG-UGGuc -5'
5513 3' -55.6 NC_001798.1 + 103958 0.75 0.46268
Target:  5'- cCGAUGCGUGCcuGCUgggcGAGCAGC-CCAGg -3'
miRNA:   3'- aGCUGCGCACG--CGG----UUUGUCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 105215 0.66 0.912763
Target:  5'- aCGGCGC-UGCcCCGuccGCAGCGCCc- -3'
miRNA:   3'- aGCUGCGcACGcGGUu--UGUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 105418 0.68 0.850021
Target:  5'- gCGGcCGCgGUGCGCUGGgccuGCAGCACUg- -3'
miRNA:   3'- aGCU-GCG-CACGCGGUU----UGUCGUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.