miRNA display CGI


Results 101 - 120 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 108639 0.66 0.924163
Target:  5'- aCGACGgG-GCGaCCGAGaGGCAcCCGGa -3'
miRNA:   3'- aGCUGCgCaCGC-GGUUUgUCGU-GGUC- -5'
5513 3' -55.6 NC_001798.1 + 111800 0.7 0.742625
Target:  5'- aCGACaucCGUGCGCCGGucGCGgGCGuCCAGg -3'
miRNA:   3'- aGCUGc--GCACGCGGUU--UGU-CGU-GGUC- -5'
5513 3' -55.6 NC_001798.1 + 111835 0.66 0.924163
Target:  5'- cUGGCGCGgggcgggaaUGcCGUCAAACAGgccgcuCACCAGg -3'
miRNA:   3'- aGCUGCGC---------AC-GCGGUUUGUC------GUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 113500 0.66 0.912763
Target:  5'- gCGGCGCGgcccugUGCGCCcugguGGCGGcCGCCc- -3'
miRNA:   3'- aGCUGCGC------ACGCGGu----UUGUC-GUGGuc -5'
5513 3' -55.6 NC_001798.1 + 113628 0.68 0.84198
Target:  5'- aUCGccuGCGCGgccgGCGCCGccauguggguGGCGGCGgCGGa -3'
miRNA:   3'- -AGC---UGCGCa---CGCGGU----------UUGUCGUgGUC- -5'
5513 3' -55.6 NC_001798.1 + 114287 0.67 0.872926
Target:  5'- cCGugGCGUGCGUgu----GCACCAa -3'
miRNA:   3'- aGCugCGCACGCGguuuguCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 114879 0.67 0.885048
Target:  5'- gUCGACgGgGUGCuggucaccaccgccGCCAucaAACAGCGCCu- -3'
miRNA:   3'- -AGCUG-CgCACG--------------CGGU---UUGUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 115853 0.66 0.924163
Target:  5'- cUCGGCGUugGcCGCCAcGCcauGGCGCCGGc -3'
miRNA:   3'- -AGCUGCGcaC-GCGGUuUG---UCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 116798 0.68 0.832913
Target:  5'- cCGACGCGgGCGCCAAcACcGCgucgacgGCCAa -3'
miRNA:   3'- aGCUGCGCaCGCGGUU-UGuCG-------UGGUc -5'
5513 3' -55.6 NC_001798.1 + 120704 0.68 0.825329
Target:  5'- aUCGGC-CGUcCGgCGAACGGCGCCGu -3'
miRNA:   3'- -AGCUGcGCAcGCgGUUUGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 122897 0.66 0.924163
Target:  5'- cCGACGCccacuacGCGUUugacuacuACAGCACCAGc -3'
miRNA:   3'- aGCUGCGca-----CGCGGuu------UGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 124086 0.71 0.662297
Target:  5'- gCGGCGCcUGCGCCccGACGGC-CCAc -3'
miRNA:   3'- aGCUGCGcACGCGGu-UUGUCGuGGUc -5'
5513 3' -55.6 NC_001798.1 + 124338 0.74 0.529096
Target:  5'- aCGGCGCGgaaaGCGUCAuccgcccGAcCAGCGCCGGg -3'
miRNA:   3'- aGCUGCGCa---CGCGGU-------UU-GUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 129666 0.68 0.826179
Target:  5'- cCGACGUGcgcguggucacccggGCGCCGGGgcccCAGUACCGGc -3'
miRNA:   3'- aGCUGCGCa--------------CGCGGUUU----GUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 130287 0.73 0.560085
Target:  5'- gCGuACGCGUcgaaGCGCCGAaugggcGCGGUGCCGGg -3'
miRNA:   3'- aGC-UGCGCA----CGCGGUU------UGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 130781 0.66 0.929503
Target:  5'- aCGAUG-GUGCGUC----GGCGCCGGg -3'
miRNA:   3'- aGCUGCgCACGCGGuuugUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 130990 0.69 0.771398
Target:  5'- gCGugGCGUGUggcaucGCCAuACGGgccgcCGCCAGg -3'
miRNA:   3'- aGCugCGCACG------CGGUuUGUC-----GUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 131549 0.72 0.600754
Target:  5'- -gGACGCGaGCGCCccGACGGC-CCGGu -3'
miRNA:   3'- agCUGCGCaCGCGGu-UUGUCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 131930 0.67 0.864746
Target:  5'- gUCGACGCGUugaugcuGCGCCu-GCuGCGCa-- -3'
miRNA:   3'- -AGCUGCGCA-------CGCGGuuUGuCGUGguc -5'
5513 3' -55.6 NC_001798.1 + 132597 0.69 0.771398
Target:  5'- aCGugGUGaGCGCCAGcggGCAGUGgCCGGc -3'
miRNA:   3'- aGCugCGCaCGCGGUU---UGUCGU-GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.