Results 121 - 140 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5513 | 3' | -55.6 | NC_001798.1 | + | 132678 | 0.69 | 0.76192 |
Target: 5'- gCGACGCGUcgcaCGCCGAcGCGGCG-CAGg -3' miRNA: 3'- aGCUGCGCAc---GCGGUU-UGUCGUgGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 134168 | 0.66 | 0.906704 |
Target: 5'- cCGuCGCGgccgcccGCGCCGcGACGGCcCCGGc -3' miRNA: 3'- aGCuGCGCa------CGCGGU-UUGUCGuGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 134444 | 0.66 | 0.918583 |
Target: 5'- cCGcGCGCGU-CGCCGAGCaccccGGCGCgCGGu -3' miRNA: 3'- aGC-UGCGCAcGCGGUUUG-----UCGUG-GUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 134936 | 0.68 | 0.849226 |
Target: 5'- gUCGGCGCGUgaccuggugcgggGCGCC--GCGGcCACCc- -3' miRNA: 3'- -AGCUGCGCA-------------CGCGGuuUGUC-GUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 134974 | 0.67 | 0.865501 |
Target: 5'- aUGcCGCGUGCcugggggccugGCCcgcGGugGGCGCCAGg -3' miRNA: 3'- aGCuGCGCACG-----------CGG---UUugUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 135341 | 0.66 | 0.926328 |
Target: 5'- -gGACGCGUGCGaCGccugccccgcgcuccGGCAGCugCu- -3' miRNA: 3'- agCUGCGCACGCgGU---------------UUGUCGugGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 136246 | 0.66 | 0.906704 |
Target: 5'- cCG-CGUGUGCGCgCGuccguauuuacuGGCAcGCGCCGGu -3' miRNA: 3'- aGCuGCGCACGCG-GU------------UUGU-CGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 136880 | 0.68 | 0.84198 |
Target: 5'- gCGugGCGUG-GCUccggGGACAGUucuCCAGg -3' miRNA: 3'- aGCugCGCACgCGG----UUUGUCGu--GGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 138426 | 0.66 | 0.924163 |
Target: 5'- cUCGcuguCGCucuUGCGCCccAACAGCACCu- -3' miRNA: 3'- -AGCu---GCGc--ACGCGGu-UUGUCGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 138552 | 0.67 | 0.89652 |
Target: 5'- aUCGAagaccagGCG-GuCGCCGGuccacaggggggggcACAGCACCAGg -3' miRNA: 3'- -AGCUg------CGCaC-GCGGUU---------------UGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 139333 | 0.67 | 0.865501 |
Target: 5'- cCGGCGCccgcgcgcgcuGUGCgGCCAuGGCGGCGuCCGGc -3' miRNA: 3'- aGCUGCG-----------CACG-CGGU-UUGUCGU-GGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 142188 | 0.74 | 0.530087 |
Target: 5'- cUGACGCG-GgGUCGAGC-GCGCCAGg -3' miRNA: 3'- aGCUGCGCaCgCGGUUUGuCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 144332 | 0.67 | 0.880134 |
Target: 5'- gCGGCGuCGcauCGCCcGACAGCcCCAGg -3' miRNA: 3'- aGCUGC-GCac-GCGGuUUGUCGuGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 146449 | 0.71 | 0.652053 |
Target: 5'- cCGGagccCGCGgccGCaGCCGAGCAGCGCCGc -3' miRNA: 3'- aGCU----GCGCa--CG-CGGUUUGUCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 146594 | 0.66 | 0.929503 |
Target: 5'- aCGGgcCGCG-GCGCC-AGCGGC-CCAc -3' miRNA: 3'- aGCU--GCGCaCGCGGuUUGUCGuGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 147985 | 0.66 | 0.929503 |
Target: 5'- -aGGCGCGUGC-CCGGccACAGC-CguGg -3' miRNA: 3'- agCUGCGCACGcGGUU--UGUCGuGguC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 149394 | 0.66 | 0.912763 |
Target: 5'- cCGACGCGggggGCGUCGggUAGUcgggggGCCu- -3' miRNA: 3'- aGCUGCGCa---CGCGGUuuGUCG------UGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 149649 | 0.66 | 0.912763 |
Target: 5'- --aGCGCGUGagGCCG---GGCGCCGGg -3' miRNA: 3'- agcUGCGCACg-CGGUuugUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 149982 | 0.72 | 0.600754 |
Target: 5'- -gGGCGCG-GCGCCc-GCGGaCGCCGGg -3' miRNA: 3'- agCUGCGCaCGCGGuuUGUC-GUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 150191 | 0.66 | 0.924163 |
Target: 5'- ---cCGCG-GCGUgGggGGCGGCACCGGg -3' miRNA: 3'- agcuGCGCaCGCGgU--UUGUCGUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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