miRNA display CGI


Results 61 - 80 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 85151 0.66 0.929503
Target:  5'- aCGAgGCccuGUGCGCCGAGCuccuGGCgGCCu- -3'
miRNA:   3'- aGCUgCG---CACGCGGUUUG----UCG-UGGuc -5'
5513 3' -55.6 NC_001798.1 + 84997 0.7 0.712977
Target:  5'- -gGACGCGUGCGCCccGCucgACCGGc -3'
miRNA:   3'- agCUGCGCACGCGGuuUGucgUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 81730 0.67 0.89388
Target:  5'- cCG-CGCGUGCgcaggucccGCCGGACGcGUGCCAa -3'
miRNA:   3'- aGCuGCGCACG---------CGGUUUGU-CGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 80261 0.67 0.872926
Target:  5'- uUCGgcACGCG-GCugGCCGAcUGGCGCCGGg -3'
miRNA:   3'- -AGC--UGCGCaCG--CGGUUuGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 79853 0.66 0.906704
Target:  5'- gCGACGUGggGCGCCucgauggacGCGGCgGCCGa -3'
miRNA:   3'- aGCUGCGCa-CGCGGuu-------UGUCG-UGGUc -5'
5513 3' -55.6 NC_001798.1 + 79359 0.67 0.89388
Target:  5'- --aGCGCGUaCGCCAGGgcCGGCgGCCAGa -3'
miRNA:   3'- agcUGCGCAcGCGGUUU--GUCG-UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 78507 0.74 0.491057
Target:  5'- -aGugGUGcGCGCCAAACAGCAgCGc -3'
miRNA:   3'- agCugCGCaCGCGGUUUGUCGUgGUc -5'
5513 3' -55.6 NC_001798.1 + 78391 0.66 0.912763
Target:  5'- cUGGuCGCGUGCGC--GGCGGCGuuGGa -3'
miRNA:   3'- aGCU-GCGCACGCGguUUGUCGUggUC- -5'
5513 3' -55.6 NC_001798.1 + 78154 0.66 0.924163
Target:  5'- aCGA-GCGUGC-CCGGcCuGCGCCGGu -3'
miRNA:   3'- aGCUgCGCACGcGGUUuGuCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 77771 0.69 0.770456
Target:  5'- uUCGACGUGgucgagcUGCGCCGccuGCAgGCGCUGGc -3'
miRNA:   3'- -AGCUGCGC-------ACGCGGUu--UGU-CGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 77732 0.66 0.929503
Target:  5'- gUCGAgGCG-GCGCUggaccgcgucgaGAACcGCGCCGa -3'
miRNA:   3'- -AGCUgCGCaCGCGG------------UUUGuCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 76643 0.69 0.80797
Target:  5'- -aGACGCGcUGCGgCAGGCgAGgGCCAu -3'
miRNA:   3'- agCUGCGC-ACGCgGUUUG-UCgUGGUc -5'
5513 3' -55.6 NC_001798.1 + 76527 0.74 0.530087
Target:  5'- cUCGACGCG-GCGCuCGcGCAGCAgCUGGa -3'
miRNA:   3'- -AGCUGCGCaCGCG-GUuUGUCGU-GGUC- -5'
5513 3' -55.6 NC_001798.1 + 71712 0.71 0.692849
Target:  5'- aCGGC-CGaGCGCCGcuuCAGCGCCGGc -3'
miRNA:   3'- aGCUGcGCaCGCGGUuu-GUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 70066 0.67 0.857864
Target:  5'- gCGcCGCGU-CGCCGAGCGcGCacGCCGGu -3'
miRNA:   3'- aGCuGCGCAcGCGGUUUGU-CG--UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 65534 0.66 0.924163
Target:  5'- -gGugGCGgaucagGCGCUugaaGAACAGguCCGGc -3'
miRNA:   3'- agCugCGCa-----CGCGG----UUUGUCguGGUC- -5'
5513 3' -55.6 NC_001798.1 + 63744 0.71 0.68981
Target:  5'- -aGGCGCGgcGCGCCuggucguuguugugAAAgAGCACCAGc -3'
miRNA:   3'- agCUGCGCa-CGCGG--------------UUUgUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 62449 0.66 0.912763
Target:  5'- aCGuCGCcgGUGgGCCGcgcGACGGCGCCc- -3'
miRNA:   3'- aGCuGCG--CACgCGGU---UUGUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 58124 0.66 0.918012
Target:  5'- cCGGCGUcUGgGUCcuugugaAGGCGGCGCCGGa -3'
miRNA:   3'- aGCUGCGcACgCGG-------UUUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 56526 0.69 0.799046
Target:  5'- aUCGugGCG-GUGCCGG--GGCGCCc- -3'
miRNA:   3'- -AGCugCGCaCGCGGUUugUCGUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.