miRNA display CGI


Results 81 - 100 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 55512 0.67 0.865501
Target:  5'- -gGACGC--GCGCCucACGGCAaccCCAGg -3'
miRNA:   3'- agCUGCGcaCGCGGuuUGUCGU---GGUC- -5'
5513 3' -55.6 NC_001798.1 + 54742 0.67 0.887121
Target:  5'- -gGACGCGgagGCCGAACcGgACCAGa -3'
miRNA:   3'- agCUGCGCacgCGGUUUGuCgUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 54545 0.68 0.833746
Target:  5'- gUCGACGCGgccgaccgggGUcCCGAGCccuGCGCCGGc -3'
miRNA:   3'- -AGCUGCGCa---------CGcGGUUUGu--CGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 53286 0.68 0.825329
Target:  5'- cCGGCGUuucugaccgGCGCCGAucGCAGCGuCCGGc -3'
miRNA:   3'- aGCUGCGca-------CGCGGUU--UGUCGU-GGUC- -5'
5513 3' -55.6 NC_001798.1 + 53133 0.68 0.825329
Target:  5'- cUGGCGCgGUGCcugacgccgGCCAAccucauccGCGGCGCCAa -3'
miRNA:   3'- aGCUGCG-CACG---------CGGUU--------UGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 52514 0.69 0.799046
Target:  5'- aCGACGCG-GCgGCCGcGC-GCGCCGu -3'
miRNA:   3'- aGCUGCGCaCG-CGGUuUGuCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 52345 0.66 0.91157
Target:  5'- gUCGugGCGgccgagcacgagGCGCUggGCGaCACCGc -3'
miRNA:   3'- -AGCugCGCa-----------CGCGGuuUGUcGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 51252 0.68 0.825329
Target:  5'- cCGuuCGCG-GaCGCCgGGACAGCGCCAu -3'
miRNA:   3'- aGCu-GCGCaC-GCGG-UUUGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 51166 0.66 0.924163
Target:  5'- cCGACGCGcguccgagGC-CCGGGCGGCggcgcccccccGCCGGg -3'
miRNA:   3'- aGCUGCGCa-------CGcGGUUUGUCG-----------UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 48381 0.67 0.89388
Target:  5'- gCGGgGCGUGcCGCCGcGACcGCACgGGc -3'
miRNA:   3'- aGCUgCGCAC-GCGGU-UUGuCGUGgUC- -5'
5513 3' -55.6 NC_001798.1 + 47062 0.71 0.652053
Target:  5'- -gGACGCGcaaUGCCGgggcGACAGCGCCGGu -3'
miRNA:   3'- agCUGCGCac-GCGGU----UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 43054 0.77 0.343101
Target:  5'- gCGGCGCGUGagccgccgGCCGAGC-GCGCCGGg -3'
miRNA:   3'- aGCUGCGCACg-------CGGUUUGuCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 40161 0.68 0.814122
Target:  5'- -gGGCGCGUGUcggaagagagugGCCGgguccgaaucgaggAGCGGCACCGa -3'
miRNA:   3'- agCUGCGCACG------------CGGU--------------UUGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 39431 0.69 0.799046
Target:  5'- cCGucCGCGUGCggggggGUCAggGACAGCGCCAu -3'
miRNA:   3'- aGCu-GCGCACG------CGGU--UUGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 38798 0.67 0.887121
Target:  5'- cUCGACGCG-GUugGCgAGGCGG-GCCAGg -3'
miRNA:   3'- -AGCUGCGCaCG--CGgUUUGUCgUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 37184 0.78 0.306138
Target:  5'- cUCGGCGCGccaggcgccGCGCCGAacgacgggcGCGGCGCCGGa -3'
miRNA:   3'- -AGCUGCGCa--------CGCGGUU---------UGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 36500 0.7 0.712977
Target:  5'- gCGACGCGgGCgGCCGGgcgggggcgcGCGGCgGCCGGg -3'
miRNA:   3'- aGCUGCGCaCG-CGGUU----------UGUCG-UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 36306 0.66 0.924163
Target:  5'- gUGugGCGgcgggGCGCgGGcCGGgGCCGGg -3'
miRNA:   3'- aGCugCGCa----CGCGgUUuGUCgUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 35145 0.68 0.816734
Target:  5'- -gGGCGCGccggUGCGCgGAGCAGCcuuccuucuCCGGa -3'
miRNA:   3'- agCUGCGC----ACGCGgUUUGUCGu--------GGUC- -5'
5513 3' -55.6 NC_001798.1 + 34951 0.67 0.872926
Target:  5'- gCGaACGCGcgGCGCCGgagggGGCGGcCGCCGa -3'
miRNA:   3'- aGC-UGCGCa-CGCGGU-----UUGUC-GUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.