miRNA display CGI


Results 81 - 100 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 138552 0.67 0.89652
Target:  5'- aUCGAagaccagGCG-GuCGCCGGuccacaggggggggcACAGCACCAGg -3'
miRNA:   3'- -AGCUg------CGCaC-GCGGUU---------------UGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 81730 0.67 0.89388
Target:  5'- cCG-CGCGUGCgcaggucccGCCGGACGcGUGCCAa -3'
miRNA:   3'- aGCuGCGCACG---------CGGUUUGU-CGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 79359 0.67 0.89388
Target:  5'- --aGCGCGUaCGCCAGGgcCGGCgGCCAGa -3'
miRNA:   3'- agcUGCGCAcGCGGUUU--GUCG-UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 48381 0.67 0.89388
Target:  5'- gCGGgGCGUGcCGCCGcGACcGCACgGGc -3'
miRNA:   3'- aGCUgCGCAC-GCGGU-UUGuCGUGgUC- -5'
5513 3' -55.6 NC_001798.1 + 28676 0.67 0.89388
Target:  5'- gCGugGCG-GCgGCCGAgGCGGuCAUCGGa -3'
miRNA:   3'- aGCugCGCaCG-CGGUU-UGUC-GUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 23927 0.67 0.89388
Target:  5'- -gGGCGCcccgGCGCCcguGugGGCGCCGa -3'
miRNA:   3'- agCUGCGca--CGCGGu--UugUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 11947 0.67 0.89388
Target:  5'- gCGGCuGCc-GCGCCAGACccAGCuCCAGg -3'
miRNA:   3'- aGCUG-CGcaCGCGGUUUG--UCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 79853 0.66 0.906704
Target:  5'- gCGACGUGggGCGCCucgauggacGCGGCgGCCGa -3'
miRNA:   3'- aGCUGCGCa-CGCGGuu-------UGUCG-UGGUc -5'
5513 3' -55.6 NC_001798.1 + 136246 0.66 0.906704
Target:  5'- cCG-CGUGUGCGCgCGuccguauuuacuGGCAcGCGCCGGu -3'
miRNA:   3'- aGCuGCGCACGCG-GU------------UUGU-CGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 1475 0.66 0.906704
Target:  5'- cCGGCGCGccggGCGCCAuGGCGuCGCCc- -3'
miRNA:   3'- aGCUGCGCa---CGCGGU-UUGUcGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 24435 0.66 0.912763
Target:  5'- aCGAgCGCGcgGUGCCcgccggcuACGGCGCCGc -3'
miRNA:   3'- aGCU-GCGCa-CGCGGuu------UGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 24041 0.66 0.912763
Target:  5'- cCG-CGCGUgGCGCCcggGGACguGGCGCUGGa -3'
miRNA:   3'- aGCuGCGCA-CGCGG---UUUG--UCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 149649 0.66 0.912763
Target:  5'- --aGCGCGUGagGCCG---GGCGCCGGg -3'
miRNA:   3'- agcUGCGCACg-CGGUuugUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 113500 0.66 0.912763
Target:  5'- gCGGCGCGgcccugUGCGCCcugguGGCGGcCGCCc- -3'
miRNA:   3'- aGCUGCGC------ACGCGGu----UUGUC-GUGGuc -5'
5513 3' -55.6 NC_001798.1 + 105215 0.66 0.912763
Target:  5'- aCGGCGC-UGCcCCGuccGCAGCGCCc- -3'
miRNA:   3'- aGCUGCGcACGcGGUu--UGUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 62449 0.66 0.912763
Target:  5'- aCGuCGCcgGUGgGCCGcgcGACGGCGCCc- -3'
miRNA:   3'- aGCuGCG--CACgCGGU---UUGUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 20283 0.66 0.912763
Target:  5'- aCGuGCGCG-GCcCCAGGCGGguCCGGc -3'
miRNA:   3'- aGC-UGCGCaCGcGGUUUGUCguGGUC- -5'
5513 3' -55.6 NC_001798.1 + 3509 0.66 0.912168
Target:  5'- aCGGCGgccgccaCGUGCGCCAggccccagccgaAGCGGCccGCCGc -3'
miRNA:   3'- aGCUGC-------GCACGCGGU------------UUGUCG--UGGUc -5'
5513 3' -55.6 NC_001798.1 + 52345 0.66 0.91157
Target:  5'- gUCGugGCGgccgagcacgagGCGCUggGCGaCACCGc -3'
miRNA:   3'- -AGCugCGCa-----------CGCGGuuUGUcGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 134168 0.66 0.906704
Target:  5'- cCGuCGCGgccgcccGCGCCGcGACGGCcCCGGc -3'
miRNA:   3'- aGCuGCGCa------CGCGGU-UUGUCGuGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.