Results 101 - 120 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5513 | 3' | -55.6 | NC_001798.1 | + | 144332 | 0.67 | 0.880134 |
Target: 5'- gCGGCGuCGcauCGCCcGACAGCcCCAGg -3' miRNA: 3'- aGCUGC-GCac-GCGGuUUGUCGuGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 25946 | 0.67 | 0.880134 |
Target: 5'- cCGGCa-GUGCGCCGugcgcuggccGGCGGCGCgGGa -3' miRNA: 3'- aGCUGcgCACGCGGU----------UUGUCGUGgUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 102119 | 0.67 | 0.880134 |
Target: 5'- gCGcGCGCauGUGCGCCAGuucCuGCugCAGg -3' miRNA: 3'- aGC-UGCG--CACGCGGUUu--GuCGugGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 97817 | 0.67 | 0.880134 |
Target: 5'- gCGGCGCGcgcgcgcuucUGCGCCcuGACGGCggGCgCGGg -3' miRNA: 3'- aGCUGCGC----------ACGCGGu-UUGUCG--UG-GUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 114287 | 0.67 | 0.872926 |
Target: 5'- cCGugGCGUGCGUgu----GCACCAa -3' miRNA: 3'- aGCugCGCACGCGguuuguCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 48381 | 0.67 | 0.89388 |
Target: 5'- gCGGgGCGUGcCGCCGcGACcGCACgGGc -3' miRNA: 3'- aGCUgCGCAC-GCGGU-UUGuCGUGgUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 79359 | 0.67 | 0.89388 |
Target: 5'- --aGCGCGUaCGCCAGGgcCGGCgGCCAGa -3' miRNA: 3'- agcUGCGCAcGCGGUUU--GUCG-UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 62449 | 0.66 | 0.912763 |
Target: 5'- aCGuCGCcgGUGgGCCGcgcGACGGCGCCc- -3' miRNA: 3'- aGCuGCG--CACgCGGU---UUGUCGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 20283 | 0.66 | 0.912763 |
Target: 5'- aCGuGCGCG-GCcCCAGGCGGguCCGGc -3' miRNA: 3'- aGC-UGCGCaCGcGGUUUGUCguGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 3509 | 0.66 | 0.912168 |
Target: 5'- aCGGCGgccgccaCGUGCGCCAggccccagccgaAGCGGCccGCCGc -3' miRNA: 3'- aGCUGC-------GCACGCGGU------------UUGUCG--UGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 52345 | 0.66 | 0.91157 |
Target: 5'- gUCGugGCGgccgagcacgagGCGCUggGCGaCACCGc -3' miRNA: 3'- -AGCugCGCa-----------CGCGGuuUGUcGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 134168 | 0.66 | 0.906704 |
Target: 5'- cCGuCGCGgccgcccGCGCCGcGACGGCcCCGGc -3' miRNA: 3'- aGCuGCGCa------CGCGGU-UUGUCGuGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 1475 | 0.66 | 0.906704 |
Target: 5'- cCGGCGCGccggGCGCCAuGGCGuCGCCc- -3' miRNA: 3'- aGCUGCGCa---CGCGGU-UUGUcGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 136246 | 0.66 | 0.906704 |
Target: 5'- cCG-CGUGUGCGCgCGuccguauuuacuGGCAcGCGCCGGu -3' miRNA: 3'- aGCuGCGCACGCG-GU------------UUGU-CGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 79853 | 0.66 | 0.906704 |
Target: 5'- gCGACGUGggGCGCCucgauggacGCGGCgGCCGa -3' miRNA: 3'- aGCUGCGCa-CGCGGuu-------UGUCG-UGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 19284 | 0.66 | 0.906704 |
Target: 5'- aCGGCGUGgugGUGCC---CGGCgACCGGg -3' miRNA: 3'- aGCUGCGCa--CGCGGuuuGUCG-UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 153687 | 0.66 | 0.900409 |
Target: 5'- -gGACGCGgggGcCGCCGccGGCGcaggcucaggcGCGCCAGg -3' miRNA: 3'- agCUGCGCa--C-GCGGU--UUGU-----------CGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 25088 | 0.66 | 0.900409 |
Target: 5'- -gGGCGC---CGCCGGGCGGCGCCc- -3' miRNA: 3'- agCUGCGcacGCGGUUUGUCGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 138552 | 0.67 | 0.89652 |
Target: 5'- aUCGAagaccagGCG-GuCGCCGGuccacaggggggggcACAGCACCAGg -3' miRNA: 3'- -AGCUg------CGCaC-GCGGUU---------------UGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 81730 | 0.67 | 0.89388 |
Target: 5'- cCG-CGCGUGCgcaggucccGCCGGACGcGUGCCAa -3' miRNA: 3'- aGCuGCGCACG---------CGGUUUGU-CGUGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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