Results 141 - 147 of 147 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5513 | 3' | -55.6 | NC_001798.1 | + | 11947 | 0.67 | 0.89388 |
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Target: 5'- gCGGCuGCc-GCGCCAGACccAGCuCCAGg -3' miRNA: 3'- aGCUG-CGcaCGCGGUUUG--UCGuGGUC- -5' |
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| 5513 | 3' | -55.6 | NC_001798.1 | + | 25494 | 0.67 | 0.89388 |
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Target: 5'- cUCGGgccCGC-UGCGCCGcGCGGCggccuggaugcGCCAGg -3' miRNA: 3'- -AGCU---GCGcACGCGGUuUGUCG-----------UGGUC- -5' |
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| 5513 | 3' | -55.6 | NC_001798.1 | + | 38798 | 0.67 | 0.887121 |
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Target: 5'- cUCGACGCG-GUugGCgAGGCGG-GCCAGg -3' miRNA: 3'- -AGCUGCGCaCG--CGgUUUGUCgUGGUC- -5' |
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| 5513 | 3' | -55.6 | NC_001798.1 | + | 54742 | 0.67 | 0.887121 |
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Target: 5'- -gGACGCGgagGCCGAACcGgACCAGa -3' miRNA: 3'- agCUGCGCacgCGGUUUGuCgUGGUC- -5' |
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| 5513 | 3' | -55.6 | NC_001798.1 | + | 23961 | 0.67 | 0.887121 |
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Target: 5'- gCGACGCG-GCGCa--GCAGUACg-- -3' miRNA: 3'- aGCUGCGCaCGCGguuUGUCGUGguc -5' |
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| 5513 | 3' | -55.6 | NC_001798.1 | + | 114879 | 0.67 | 0.885048 |
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Target: 5'- gUCGACgGgGUGCuggucaccaccgccGCCAucaAACAGCGCCu- -3' miRNA: 3'- -AGCUG-CgCACG--------------CGGU---UUGUCGUGGuc -5' |
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| 5513 | 3' | -55.6 | NC_001798.1 | + | 113628 | 0.68 | 0.84198 |
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Target: 5'- aUCGccuGCGCGgccgGCGCCGccauguggguGGCGGCGgCGGa -3' miRNA: 3'- -AGC---UGCGCa---CGCGGU----------UUGUCGUgGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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