Results 121 - 140 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5513 | 3' | -55.6 | NC_001798.1 | + | 5297 | 0.67 | 0.857864 |
Target: 5'- aUCGACGCcgccGCGCCc--CGGCucGCCGGg -3' miRNA: 3'- -AGCUGCGca--CGCGGuuuGUCG--UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 70066 | 0.67 | 0.857864 |
Target: 5'- gCGcCGCGU-CGCCGAGCGcGCacGCCGGu -3' miRNA: 3'- aGCuGCGCAcGCGGUUUGU-CG--UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 114879 | 0.67 | 0.885048 |
Target: 5'- gUCGACgGgGUGCuggucaccaccgccGCCAucaAACAGCGCCu- -3' miRNA: 3'- -AGCUG-CgCACG--------------CGGU---UUGUCGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 23961 | 0.67 | 0.887121 |
Target: 5'- gCGACGCG-GCGCa--GCAGUACg-- -3' miRNA: 3'- aGCUGCGCaCGCGguuUGUCGUGguc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 54742 | 0.67 | 0.887121 |
Target: 5'- -gGACGCGgagGCCGAACcGgACCAGa -3' miRNA: 3'- agCUGCGCacgCGGUUUGuCgUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 1475 | 0.66 | 0.906704 |
Target: 5'- cCGGCGCGccggGCGCCAuGGCGuCGCCc- -3' miRNA: 3'- aGCUGCGCa---CGCGGU-UUGUcGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 136246 | 0.66 | 0.906704 |
Target: 5'- cCG-CGUGUGCGCgCGuccguauuuacuGGCAcGCGCCGGu -3' miRNA: 3'- aGCuGCGCACGCG-GU------------UUGU-CGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 79853 | 0.66 | 0.906704 |
Target: 5'- gCGACGUGggGCGCCucgauggacGCGGCgGCCGa -3' miRNA: 3'- aGCUGCGCa-CGCGGuu-------UGUCG-UGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 19284 | 0.66 | 0.906704 |
Target: 5'- aCGGCGUGgugGUGCC---CGGCgACCGGg -3' miRNA: 3'- aGCUGCGCa--CGCGGuuuGUCG-UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 153687 | 0.66 | 0.900409 |
Target: 5'- -gGACGCGgggGcCGCCGccGGCGcaggcucaggcGCGCCAGg -3' miRNA: 3'- agCUGCGCa--C-GCGGU--UUGU-----------CGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 25088 | 0.66 | 0.900409 |
Target: 5'- -gGGCGC---CGCCGGGCGGCGCCc- -3' miRNA: 3'- agCUGCGcacGCGGUUUGUCGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 138552 | 0.67 | 0.89652 |
Target: 5'- aUCGAagaccagGCG-GuCGCCGGuccacaggggggggcACAGCACCAGg -3' miRNA: 3'- -AGCUg------CGCaC-GCGGUU---------------UGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 81730 | 0.67 | 0.89388 |
Target: 5'- cCG-CGCGUGCgcaggucccGCCGGACGcGUGCCAa -3' miRNA: 3'- aGCuGCGCACG---------CGGUUUGU-CGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 79359 | 0.67 | 0.89388 |
Target: 5'- --aGCGCGUaCGCCAGGgcCGGCgGCCAGa -3' miRNA: 3'- agcUGCGCAcGCGGUUU--GUCG-UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 48381 | 0.67 | 0.89388 |
Target: 5'- gCGGgGCGUGcCGCCGcGACcGCACgGGc -3' miRNA: 3'- aGCUgCGCAC-GCGGU-UUGuCGUGgUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 28676 | 0.67 | 0.89388 |
Target: 5'- gCGugGCG-GCgGCCGAgGCGGuCAUCGGa -3' miRNA: 3'- aGCugCGCaCG-CGGUU-UGUC-GUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 23927 | 0.67 | 0.89388 |
Target: 5'- -gGGCGCcccgGCGCCcguGugGGCGCCGa -3' miRNA: 3'- agCUGCGca--CGCGGu--UugUCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 11947 | 0.67 | 0.89388 |
Target: 5'- gCGGCuGCc-GCGCCAGACccAGCuCCAGg -3' miRNA: 3'- aGCUG-CGcaCGCGGUUUG--UCGuGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 25494 | 0.67 | 0.89388 |
Target: 5'- cUCGGgccCGC-UGCGCCGcGCGGCggccuggaugcGCCAGg -3' miRNA: 3'- -AGCU---GCGcACGCGGUuUGUCG-----------UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 38798 | 0.67 | 0.887121 |
Target: 5'- cUCGACGCG-GUugGCgAGGCGG-GCCAGg -3' miRNA: 3'- -AGCUGCGCaCG--CGgUUUGUCgUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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