miRNA display CGI


Results 1 - 20 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 37184 0.78 0.306138
Target:  5'- cUCGGCGCGccaggcgccGCGCCGAacgacgggcGCGGCGCCGGa -3'
miRNA:   3'- -AGCUGCGCa--------CGCGGUU---------UGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 43054 0.77 0.343101
Target:  5'- gCGGCGCGUGagccgccgGCCGAGC-GCGCCGGg -3'
miRNA:   3'- aGCUGCGCACg-------CGGUUUGuCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 16540 0.76 0.400049
Target:  5'- gCGuuGgGUGCGCCAAauccgcguaccgGCGGCGCCAGc -3'
miRNA:   3'- aGCugCgCACGCGGUU------------UGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 2610 0.75 0.444248
Target:  5'- -gGGCGCGggGCGCCGcccGGCGGCGCCc- -3'
miRNA:   3'- agCUGCGCa-CGCGGU---UUGUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 103958 0.75 0.46268
Target:  5'- cCGAUGCGUGCcuGCUgggcGAGCAGC-CCAGg -3'
miRNA:   3'- aGCUGCGCACG--CGG----UUUGUCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 16330 0.74 0.491057
Target:  5'- gCGGCGCG-GUcCCAGAuCGGCACCAGc -3'
miRNA:   3'- aGCUGCGCaCGcGGUUU-GUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 150833 0.74 0.491057
Target:  5'- ---cCGCGggGCGCCAGGgGGCGCCGGu -3'
miRNA:   3'- agcuGCGCa-CGCGGUUUgUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 78507 0.74 0.491057
Target:  5'- -aGugGUGcGCGCCAAACAGCAgCGc -3'
miRNA:   3'- agCugCGCaCGCGGUUUGUCGUgGUc -5'
5513 3' -55.6 NC_001798.1 + 97710 0.74 0.510416
Target:  5'- cUCGGgcgcUGCGUGCG-CGAGCAGCGCgGGg -3'
miRNA:   3'- -AGCU----GCGCACGCgGUUUGUCGUGgUC- -5'
5513 3' -55.6 NC_001798.1 + 8679 0.74 0.520215
Target:  5'- cCGAcgcacCGCGUGCGCCGccguCGGCGCCu- -3'
miRNA:   3'- aGCU-----GCGCACGCGGUuu--GUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 124338 0.74 0.529096
Target:  5'- aCGGCGCGgaaaGCGUCAuccgcccGAcCAGCGCCGGg -3'
miRNA:   3'- aGCUGCGCa---CGCGGU-------UU-GUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 142188 0.74 0.530087
Target:  5'- cUGACGCG-GgGUCGAGC-GCGCCAGg -3'
miRNA:   3'- aGCUGCGCaCgCGGUUUGuCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 76527 0.74 0.530087
Target:  5'- cUCGACGCG-GCGCuCGcGCAGCAgCUGGa -3'
miRNA:   3'- -AGCUGCGCaCGCG-GUuUGUCGU-GGUC- -5'
5513 3' -55.6 NC_001798.1 + 130287 0.73 0.560085
Target:  5'- gCGuACGCGUcgaaGCGCCGAaugggcGCGGUGCCGGg -3'
miRNA:   3'- aGC-UGCGCA----CGCGGUU------UGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 26224 0.73 0.570193
Target:  5'- gCGACGCcaugGCGCCcGGC-GCGCCGGa -3'
miRNA:   3'- aGCUGCGca--CGCGGuUUGuCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 21833 0.73 0.570193
Target:  5'- aUGACGCGgGCcCCGGGCagGGCGCCAGu -3'
miRNA:   3'- aGCUGCGCaCGcGGUUUG--UCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 2793 0.73 0.580345
Target:  5'- -aGGCGCGgGCuCCGcGGCAGCGCCGGg -3'
miRNA:   3'- agCUGCGCaCGcGGU-UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 21970 0.73 0.590535
Target:  5'- aUGACGCGgGCcCCGGGCagGGCGCCAGc -3'
miRNA:   3'- aGCUGCGCaCGcGGUUUG--UCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 131549 0.72 0.600754
Target:  5'- -gGACGCGaGCGCCccGACGGC-CCGGu -3'
miRNA:   3'- agCUGCGCaCGCGGu-UUGUCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 149982 0.72 0.600754
Target:  5'- -gGGCGCG-GCGCCc-GCGGaCGCCGGg -3'
miRNA:   3'- agCUGCGCaCGCGGuuUGUC-GUGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.