miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 1264 0.71 0.662297
Target:  5'- gCGucCGCGU-CGUCGcGCAGCACCAGc -3'
miRNA:   3'- aGCu-GCGCAcGCGGUuUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 1293 0.7 0.742625
Target:  5'- -gGGCGCGU-CGCCGucgggcucgAGCAGCGCCc- -3'
miRNA:   3'- agCUGCGCAcGCGGU---------UUGUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 1375 0.67 0.872926
Target:  5'- aCGGCGUc-GCGCCc--CAGCGCCAc -3'
miRNA:   3'- aGCUGCGcaCGCGGuuuGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 1475 0.66 0.906704
Target:  5'- cCGGCGCGccggGCGCCAuGGCGuCGCCc- -3'
miRNA:   3'- aGCUGCGCa---CGCGGU-UUGUcGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 1508 0.71 0.672517
Target:  5'- cCGAgGCGgcgGCccgGCCGucCAGCGCCGGg -3'
miRNA:   3'- aGCUgCGCa--CG---CGGUuuGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 1543 0.69 0.771398
Target:  5'- aCGGCGCGgcgguacucGCGCgGggacAugGGCACCAGc -3'
miRNA:   3'- aGCUGCGCa--------CGCGgU----UugUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 1591 0.72 0.600754
Target:  5'- cCGaaGCGCGUGCGCac-GCGGUACCGc -3'
miRNA:   3'- aGC--UGCGCACGCGguuUGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 1873 0.69 0.80797
Target:  5'- aUGAgGCGgcggucgcagGCGCCGgccAGCAGCcCCAGg -3'
miRNA:   3'- aGCUgCGCa---------CGCGGU---UUGUCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 2422 0.71 0.691836
Target:  5'- cCGGCGUGUG-GCUGggccccggcggcuGGCGGCGCCAGc -3'
miRNA:   3'- aGCUGCGCACgCGGU-------------UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 2610 0.75 0.444248
Target:  5'- -gGGCGCGggGCGCCGcccGGCGGCGCCc- -3'
miRNA:   3'- agCUGCGCa-CGCGGU---UUGUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 2793 0.73 0.580345
Target:  5'- -aGGCGCGgGCuCCGcGGCAGCGCCGGg -3'
miRNA:   3'- agCUGCGCaCGcGGU-UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 2844 0.66 0.912763
Target:  5'- aCGGCGCGcacgGCgGCCAcGGCGGCcucgcugccGCCGGc -3'
miRNA:   3'- aGCUGCGCa---CG-CGGU-UUGUCG---------UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 3217 0.68 0.825329
Target:  5'- -gGGCGCG-GCGCuCAGGC-GCcCCAGg -3'
miRNA:   3'- agCUGCGCaCGCG-GUUUGuCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 3509 0.66 0.912168
Target:  5'- aCGGCGgccgccaCGUGCGCCAggccccagccgaAGCGGCccGCCGc -3'
miRNA:   3'- aGCUGC-------GCACGCGGU------------UUGUCG--UGGUc -5'
5513 3' -55.6 NC_001798.1 + 4406 0.69 0.78997
Target:  5'- gUCGGCGgG-GCGCCGGgggucGCGGCGaCAGg -3'
miRNA:   3'- -AGCUGCgCaCGCGGUU-----UGUCGUgGUC- -5'
5513 3' -55.6 NC_001798.1 + 5297 0.67 0.857864
Target:  5'- aUCGACGCcgccGCGCCc--CGGCucGCCGGg -3'
miRNA:   3'- -AGCUGCGca--CGCGGuuuGUCG--UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 8679 0.74 0.520215
Target:  5'- cCGAcgcacCGCGUGCGCCGccguCGGCGCCu- -3'
miRNA:   3'- aGCU-----GCGCACGCGGUuu--GUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 9152 0.71 0.702943
Target:  5'- -gGGCGCG-GCGCCGccc-GCGCCGGg -3'
miRNA:   3'- agCUGCGCaCGCGGUuuguCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 11453 0.66 0.929503
Target:  5'- cUGGcCGCGgggGCGCCuguauCGGCGCUGGc -3'
miRNA:   3'- aGCU-GCGCa--CGCGGuuu--GUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 11757 0.69 0.80797
Target:  5'- -aGGCGCG-GgGCCGAaaagggaaGCuGCGCCGGa -3'
miRNA:   3'- agCUGCGCaCgCGGUU--------UGuCGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.