Results 61 - 80 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5513 | 3' | -55.6 | NC_001798.1 | + | 1375 | 0.67 | 0.872926 |
Target: 5'- aCGGCGUc-GCGCCc--CAGCGCCAc -3' miRNA: 3'- aGCUGCGcaCGCGGuuuGUCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 114287 | 0.67 | 0.872926 |
Target: 5'- cCGugGCGUGCGUgu----GCACCAa -3' miRNA: 3'- aGCugCGCACGCGguuuguCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 55512 | 0.67 | 0.865501 |
Target: 5'- -gGACGC--GCGCCucACGGCAaccCCAGg -3' miRNA: 3'- agCUGCGcaCGCGGuuUGUCGU---GGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 134974 | 0.67 | 0.865501 |
Target: 5'- aUGcCGCGUGCcugggggccugGCCcgcGGugGGCGCCAGg -3' miRNA: 3'- aGCuGCGCACG-----------CGG---UUugUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 23482 | 0.67 | 0.865501 |
Target: 5'- aCGACGCcgcccGCGCCcccgcCAGCGCCGc -3' miRNA: 3'- aGCUGCGca---CGCGGuuu--GUCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 139333 | 0.67 | 0.865501 |
Target: 5'- cCGGCGCccgcgcgcgcuGUGCgGCCAuGGCGGCGuCCGGc -3' miRNA: 3'- aGCUGCG-----------CACG-CGGU-UUGUCGU-GGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 131930 | 0.67 | 0.864746 |
Target: 5'- gUCGACGCGUugaugcuGCGCCu-GCuGCGCa-- -3' miRNA: 3'- -AGCUGCGCA-------CGCGGuuUGuCGUGguc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 5297 | 0.67 | 0.857864 |
Target: 5'- aUCGACGCcgccGCGCCc--CGGCucGCCGGg -3' miRNA: 3'- -AGCUGCGca--CGCGGuuuGUCG--UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 70066 | 0.67 | 0.857864 |
Target: 5'- gCGcCGCGU-CGCCGAGCGcGCacGCCGGu -3' miRNA: 3'- aGCuGCGCAcGCGGUUUGU-CG--UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 16840 | 0.68 | 0.850021 |
Target: 5'- gCGAUgGCGUGCaugacGCCGGGCGGCaagguGCCAa -3' miRNA: 3'- aGCUG-CGCACG-----CGGUUUGUCG-----UGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 105418 | 0.68 | 0.850021 |
Target: 5'- gCGGcCGCgGUGCGCUGGgccuGCAGCACUg- -3' miRNA: 3'- aGCU-GCG-CACGCGGUU----UGUCGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 134936 | 0.68 | 0.849226 |
Target: 5'- gUCGGCGCGUgaccuggugcgggGCGCC--GCGGcCACCc- -3' miRNA: 3'- -AGCUGCGCA-------------CGCGGuuUGUC-GUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 113628 | 0.68 | 0.84198 |
Target: 5'- aUCGccuGCGCGgccgGCGCCGccauguggguGGCGGCGgCGGa -3' miRNA: 3'- -AGC---UGCGCa---CGCGGU----------UUGUCGUgGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 97273 | 0.68 | 0.84198 |
Target: 5'- aUCG-CGCGUucggGgGCCAccuGGCGGCGCUGGa -3' miRNA: 3'- -AGCuGCGCA----CgCGGU---UUGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 136880 | 0.68 | 0.84198 |
Target: 5'- gCGugGCGUG-GCUccggGGACAGUucuCCAGg -3' miRNA: 3'- aGCugCGCACgCGG----UUUGUCGu--GGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 54545 | 0.68 | 0.833746 |
Target: 5'- gUCGACGCGgccgaccgggGUcCCGAGCccuGCGCCGGc -3' miRNA: 3'- -AGCUGCGCa---------CGcGGUUUGu--CGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 116798 | 0.68 | 0.832913 |
Target: 5'- cCGACGCGgGCGCCAAcACcGCgucgacgGCCAa -3' miRNA: 3'- aGCUGCGCaCGCGGUU-UGuCG-------UGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 129666 | 0.68 | 0.826179 |
Target: 5'- cCGACGUGcgcguggucacccggGCGCCGGGgcccCAGUACCGGc -3' miRNA: 3'- aGCUGCGCa--------------CGCGGUUU----GUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 53286 | 0.68 | 0.825329 |
Target: 5'- cCGGCGUuucugaccgGCGCCGAucGCAGCGuCCGGc -3' miRNA: 3'- aGCUGCGca-------CGCGGUU--UGUCGU-GGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 53133 | 0.68 | 0.825329 |
Target: 5'- cUGGCGCgGUGCcugacgccgGCCAAccucauccGCGGCGCCAa -3' miRNA: 3'- aGCUGCG-CACG---------CGGUU--------UGUCGUGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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