Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5513 | 5' | -53.3 | NC_001798.1 | + | 149635 | 0.66 | 0.96857 |
Target: 5'- cGCgAUgGGCAGGUaGcGCGUGaGGCc -3' miRNA: 3'- aCGgUAgUCGUCCAgCaCGUAUaCCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 2949 | 0.66 | 0.95014 |
Target: 5'- aGCCAggcgcgcaGGCGGGgcgCGUcgGCGUGcGGCg -3' miRNA: 3'- aCGGUag------UCGUCCa--GCA--CGUAUaCCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 13608 | 0.66 | 0.958215 |
Target: 5'- gGCCAUCuuaAGCgagGGGUCugcuaagGCGUAuuUGGCg -3' miRNA: 3'- aCGGUAG---UCG---UCCAGca-----CGUAU--ACCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 97103 | 0.66 | 0.958215 |
Target: 5'- cGCCAUCAGCGagcugcgcuucuGGcUG-GCGUccGGCg -3' miRNA: 3'- aCGGUAGUCGU------------CCaGCaCGUAuaCCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 14041 | 0.66 | 0.958215 |
Target: 5'- aUGCC--CGGCAcGGg---GCGUGUGGCg -3' miRNA: 3'- -ACGGuaGUCGU-CCagcaCGUAUACCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 16633 | 0.66 | 0.958215 |
Target: 5'- cGCCGg-GGCAGGUCuUGCcgcccGGCg -3' miRNA: 3'- aCGGUagUCGUCCAGcACGuaua-CCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 65022 | 0.66 | 0.958215 |
Target: 5'- cGCCGUguGCAGGcCcUGCAUgccaaugcccAUGGa -3' miRNA: 3'- aCGGUAguCGUCCaGcACGUA----------UACCg -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 2300 | 0.66 | 0.961896 |
Target: 5'- gGCCAgcgCGcGCGGGUCGaaCAUGagGGCc -3' miRNA: 3'- aCGGUa--GU-CGUCCAGCacGUAUa-CCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 39997 | 0.66 | 0.961896 |
Target: 5'- cUGCUGUCGGacucgGGGUCGUcGCGgc-GGCc -3' miRNA: 3'- -ACGGUAGUCg----UCCAGCA-CGUauaCCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 95393 | 0.66 | 0.961896 |
Target: 5'- gGUCGcCAGCAG--CGUGUuUGUGGCg -3' miRNA: 3'- aCGGUaGUCGUCcaGCACGuAUACCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 101831 | 0.66 | 0.961896 |
Target: 5'- aGCUcgCGGCGGGgggaggCGUGgGUcccGGCg -3' miRNA: 3'- aCGGuaGUCGUCCa-----GCACgUAua-CCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 36279 | 0.66 | 0.961896 |
Target: 5'- gGUgGgCGGCGGGggggggugcCGUGgGUGUGGCg -3' miRNA: 3'- aCGgUaGUCGUCCa--------GCACgUAUACCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 76004 | 0.66 | 0.962251 |
Target: 5'- cGCCggCGGCAGGgcccCGUGCccgcccgcccugGGCc -3' miRNA: 3'- aCGGuaGUCGUCCa---GCACGuaua--------CCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 153818 | 0.66 | 0.965346 |
Target: 5'- gGCgG-CGGCAGGcgcggCGUGCGg--GGCc -3' miRNA: 3'- aCGgUaGUCGUCCa----GCACGUauaCCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 102773 | 0.67 | 0.925624 |
Target: 5'- cGCUcgCGGCGGGggaUGUGUc-AUGGCa -3' miRNA: 3'- aCGGuaGUCGUCCa--GCACGuaUACCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 109522 | 0.67 | 0.929435 |
Target: 5'- gGCUAUCAGCuGGcguUCGUGUugGacagccccgcggccUAUGGCg -3' miRNA: 3'- aCGGUAGUCGuCC---AGCACG--U--------------AUACCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 68969 | 0.67 | 0.931031 |
Target: 5'- cGCCGU-AGUuGGUCGUG-AUGUGGg -3' miRNA: 3'- aCGGUAgUCGuCCAGCACgUAUACCg -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 9169 | 0.67 | 0.936184 |
Target: 5'- cGCCGgggggcagggucUCuGGCGGGUccccgCGUGCGUccgcgAUGGCa -3' miRNA: 3'- aCGGU------------AG-UCGUCCA-----GCACGUA-----UACCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 52578 | 0.67 | 0.936184 |
Target: 5'- gGCCGaCAcGguGGUCGcgUGCGUGgcccUGGCc -3' miRNA: 3'- aCGGUaGU-CguCCAGC--ACGUAU----ACCG- -5' |
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5513 | 5' | -53.3 | NC_001798.1 | + | 69000 | 0.67 | 0.941086 |
Target: 5'- cGCC-UCGGCGGcGUCGcgcGCAUcGUaGGCg -3' miRNA: 3'- aCGGuAGUCGUC-CAGCa--CGUA-UA-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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