miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 5' -53.3 NC_001798.1 + 87989 0.68 0.919964
Target:  5'- cGCCuccCGGgGGGUCG-GCAUGcgacGGCg -3'
miRNA:   3'- aCGGua-GUCgUCCAGCaCGUAUa---CCG- -5'
5513 5' -53.3 NC_001798.1 + 68774 0.68 0.919964
Target:  5'- gGCCugccCGGguGGcCgGUGUGUGUGGCc -3'
miRNA:   3'- aCGGua--GUCguCCaG-CACGUAUACCG- -5'
5513 5' -53.3 NC_001798.1 + 26519 0.68 0.894817
Target:  5'- gGCCG-CGGCGGG-CGgcgGCGUggagGUGGUg -3'
miRNA:   3'- aCGGUaGUCGUCCaGCa--CGUA----UACCG- -5'
5513 5' -53.3 NC_001798.1 + 2517 0.68 0.894817
Target:  5'- gGCCGcggCGGCGGcGUCG-GCGg--GGCg -3'
miRNA:   3'- aCGGUa--GUCGUC-CAGCaCGUauaCCG- -5'
5513 5' -53.3 NC_001798.1 + 40113 0.69 0.873398
Target:  5'- aGCCAUguuGUAGGUCGccgggGCugggAUGGCg -3'
miRNA:   3'- aCGGUAgu-CGUCCAGCa----CGua--UACCG- -5'
5513 5' -53.3 NC_001798.1 + 12025 0.69 0.865794
Target:  5'- cGCCA-CGGCGGGgcggCGgggGCAUGcGGUc -3'
miRNA:   3'- aCGGUaGUCGUCCa---GCa--CGUAUaCCG- -5'
5513 5' -53.3 NC_001798.1 + 57393 0.69 0.856376
Target:  5'- aGCCGUaccgggcCAGCGGGUCGUggcgguuGCAUcgcacgGGCu -3'
miRNA:   3'- aCGGUA-------GUCGUCCAGCA-------CGUAua----CCG- -5'
5513 5' -53.3 NC_001798.1 + 52398 0.69 0.849925
Target:  5'- cGCCAcCAGCGGGcugaacgcCGUGCug--GGCg -3'
miRNA:   3'- aCGGUaGUCGUCCa-------GCACGuauaCCG- -5'
5513 5' -53.3 NC_001798.1 + 4196 0.7 0.83322
Target:  5'- cGCCcgCGGCGuGGUC-UGCGgcgcUGGCg -3'
miRNA:   3'- aCGGuaGUCGU-CCAGcACGUau--ACCG- -5'
5513 5' -53.3 NC_001798.1 + 151575 0.7 0.824573
Target:  5'- cUGCgCGUCGGCGGG-CGUGgGgcugcccUGGCg -3'
miRNA:   3'- -ACG-GUAGUCGUCCaGCACgUau-----ACCG- -5'
5513 5' -53.3 NC_001798.1 + 122044 0.7 0.810355
Target:  5'- gGCCGUCAGCGGGggagcccugggcgcgUCGgacGCGga-GGCg -3'
miRNA:   3'- aCGGUAGUCGUCC---------------AGCa--CGUauaCCG- -5'
5513 5' -53.3 NC_001798.1 + 68359 0.71 0.759361
Target:  5'- gGCgUAUguGCAGGUgCGUGCGguagGGCg -3'
miRNA:   3'- aCG-GUAguCGUCCA-GCACGUaua-CCG- -5'
5513 5' -53.3 NC_001798.1 + 31291 0.72 0.719262
Target:  5'- cUGCCGUC-GCGGccGUCGUGCcgagaGUGGCc -3'
miRNA:   3'- -ACGGUAGuCGUC--CAGCACGua---UACCG- -5'
5513 5' -53.3 NC_001798.1 + 40591 0.72 0.709015
Target:  5'- gGCCcgaGGCGGGUCGUGUauuuaauuuGUAUGGg -3'
miRNA:   3'- aCGGuagUCGUCCAGCACG---------UAUACCg -5'
5513 5' -53.3 NC_001798.1 + 76190 0.73 0.667433
Target:  5'- gGCC-UCGGCcgcGGUCGUGCccAUGGUc -3'
miRNA:   3'- aCGGuAGUCGu--CCAGCACGuaUACCG- -5'
5513 5' -53.3 NC_001798.1 + 39460 0.74 0.631681
Target:  5'- cGCCAUCAGCGGaGggggggccuggcgCGUGCcucGUGGCc -3'
miRNA:   3'- aCGGUAGUCGUC-Ca------------GCACGua-UACCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.