miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 5' -53.3 NC_001798.1 + 68359 0.71 0.759361
Target:  5'- gGCgUAUguGCAGGUgCGUGCGguagGGCg -3'
miRNA:   3'- aCG-GUAguCGUCCA-GCACGUaua-CCG- -5'
5513 5' -53.3 NC_001798.1 + 68774 0.68 0.919964
Target:  5'- gGCCugccCGGguGGcCgGUGUGUGUGGCc -3'
miRNA:   3'- aCGGua--GUCguCCaG-CACGUAUACCG- -5'
5513 5' -53.3 NC_001798.1 + 68969 0.67 0.931031
Target:  5'- cGCCGU-AGUuGGUCGUG-AUGUGGg -3'
miRNA:   3'- aCGGUAgUCGuCCAGCACgUAUACCg -5'
5513 5' -53.3 NC_001798.1 + 69000 0.67 0.941086
Target:  5'- cGCC-UCGGCGGcGUCGcgcGCAUcGUaGGCg -3'
miRNA:   3'- aCGGuAGUCGUC-CAGCa--CGUA-UA-CCG- -5'
5513 5' -53.3 NC_001798.1 + 76004 0.66 0.962251
Target:  5'- cGCCggCGGCAGGgcccCGUGCccgcccgcccugGGCc -3'
miRNA:   3'- aCGGuaGUCGUCCa---GCACGuaua--------CCG- -5'
5513 5' -53.3 NC_001798.1 + 76190 0.73 0.667433
Target:  5'- gGCC-UCGGCcgcGGUCGUGCccAUGGUc -3'
miRNA:   3'- aCGGuAGUCGu--CCAGCACGuaUACCG- -5'
5513 5' -53.3 NC_001798.1 + 87989 0.68 0.919964
Target:  5'- cGCCuccCGGgGGGUCG-GCAUGcgacGGCg -3'
miRNA:   3'- aCGGua-GUCgUCCAGCaCGUAUa---CCG- -5'
5513 5' -53.3 NC_001798.1 + 95393 0.66 0.961896
Target:  5'- gGUCGcCAGCAG--CGUGUuUGUGGCg -3'
miRNA:   3'- aCGGUaGUCGUCcaGCACGuAUACCG- -5'
5513 5' -53.3 NC_001798.1 + 97103 0.66 0.958215
Target:  5'- cGCCAUCAGCGagcugcgcuucuGGcUG-GCGUccGGCg -3'
miRNA:   3'- aCGGUAGUCGU------------CCaGCaCGUAuaCCG- -5'
5513 5' -53.3 NC_001798.1 + 101831 0.66 0.961896
Target:  5'- aGCUcgCGGCGGGgggaggCGUGgGUcccGGCg -3'
miRNA:   3'- aCGGuaGUCGUCCa-----GCACgUAua-CCG- -5'
5513 5' -53.3 NC_001798.1 + 102773 0.67 0.925624
Target:  5'- cGCUcgCGGCGGGggaUGUGUc-AUGGCa -3'
miRNA:   3'- aCGGuaGUCGUCCa--GCACGuaUACCG- -5'
5513 5' -53.3 NC_001798.1 + 109522 0.67 0.929435
Target:  5'- gGCUAUCAGCuGGcguUCGUGUugGacagccccgcggccUAUGGCg -3'
miRNA:   3'- aCGGUAGUCGuCC---AGCACG--U--------------AUACCG- -5'
5513 5' -53.3 NC_001798.1 + 122044 0.7 0.810355
Target:  5'- gGCCGUCAGCGGGggagcccugggcgcgUCGgacGCGga-GGCg -3'
miRNA:   3'- aCGGUAGUCGUCC---------------AGCa--CGUauaCCG- -5'
5513 5' -53.3 NC_001798.1 + 149635 0.66 0.96857
Target:  5'- cGCgAUgGGCAGGUaGcGCGUGaGGCc -3'
miRNA:   3'- aCGgUAgUCGUCCAgCaCGUAUaCCG- -5'
5513 5' -53.3 NC_001798.1 + 151575 0.7 0.824573
Target:  5'- cUGCgCGUCGGCGGG-CGUGgGgcugcccUGGCg -3'
miRNA:   3'- -ACG-GUAGUCGUCCaGCACgUau-----ACCG- -5'
5513 5' -53.3 NC_001798.1 + 153818 0.66 0.965346
Target:  5'- gGCgG-CGGCAGGcgcggCGUGCGg--GGCc -3'
miRNA:   3'- aCGgUaGUCGUCCa----GCACGUauaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.