miRNA: 3'- -CCCUG------------UGGaGCUAGUGG---CAGGCUUuu -5'
miRNA: 3'- -CCCuGUGGaGcuAGUGGCA-GGCuuUU- -5'
Results 21 - 22 of 22 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5514 | 3' | -53 | NC_001798.1 | + | 150003 | 0.69 | 0.897127 |
|
Target: 5'- cGGGGCgagcggcccgugGCCgCGGUCGCCcgaGUCCGAGu- -3' miRNA: 3'- -CCCUG------------UGGaGCUAGUGG---CAGGCUUuu -5' |
|||||||
| 5514 | 3' | -53 | NC_001798.1 | + | 152202 | 0.66 | 0.968963 |
|
Target: 5'- gGGGuCGCC-CucUCACCGUgCCGggGGu -3' miRNA: 3'- -CCCuGUGGaGcuAGUGGCA-GGCuuUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home