miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5514 5' -58.9 NC_001798.1 + 5610 0.78 0.197672
Target:  5'- uGGUCCGCGGGCGGC-UCcgccccaaaggggGCGGGgccGCa -3'
miRNA:   3'- -CCAGGCGCCCGUCGuAGa------------CGUCCa--CG- -5'
5514 5' -58.9 NC_001798.1 + 68347 0.77 0.230697
Target:  5'- -cUCUGCGaaGGCGGCGUaugUGCAGGUGCg -3'
miRNA:   3'- ccAGGCGC--CCGUCGUAg--ACGUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 2516 0.77 0.236259
Target:  5'- cGG-CCGCGGcgGCGGCGUCgGCGGG-GCg -3'
miRNA:   3'- -CCaGGCGCC--CGUCGUAGaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 90721 0.76 0.253623
Target:  5'- -aUCgCGCGGGgcaCGGCA-CUGCAGGUGCc -3'
miRNA:   3'- ccAG-GCGCCC---GUCGUaGACGUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 60244 0.76 0.265772
Target:  5'- --cUCGCGGGCGGCAaaggugacGCAGGUGCg -3'
miRNA:   3'- ccaGGCGCCCGUCGUaga-----CGUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 2760 0.75 0.305041
Target:  5'- aGGUCCGCGgcGGCGGCGgcggcggagcUCaGCAGGcGCg -3'
miRNA:   3'- -CCAGGCGC--CCGUCGU----------AGaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 97754 0.74 0.34105
Target:  5'- --gCUGCGGGuCAGCGUCcacgGCgAGGUGCu -3'
miRNA:   3'- ccaGGCGCCC-GUCGUAGa---CG-UCCACG- -5'
5514 5' -58.9 NC_001798.1 + 145787 0.73 0.396444
Target:  5'- gGGUCCacacaggagcgcGCGGGCGGCAgaaacGCGGGcGCg -3'
miRNA:   3'- -CCAGG------------CGCCCGUCGUaga--CGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 153674 0.73 0.404817
Target:  5'- cGUCCGCGGGCGGgGaC-GCGGGgGCc -3'
miRNA:   3'- cCAGGCGCCCGUCgUaGaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 15229 0.72 0.457306
Target:  5'- gGGUCCGUGuGGguGCGUCUuuGGGUcCg -3'
miRNA:   3'- -CCAGGCGC-CCguCGUAGAcgUCCAcG- -5'
5514 5' -58.9 NC_001798.1 + 52164 0.72 0.466406
Target:  5'- --cCCGCGGGaggccGCGUUUGCGGG-GCg -3'
miRNA:   3'- ccaGGCGCCCgu---CGUAGACGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 16063 0.71 0.475599
Target:  5'- aGGUCgcUGgGGGCGGCGggcgUCUGUGGGgGCa -3'
miRNA:   3'- -CCAG--GCgCCCGUCGU----AGACGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 12703 0.71 0.484882
Target:  5'- cGGguugCUGgGGGCGGCGgggGCGuGGUGCg -3'
miRNA:   3'- -CCa---GGCgCCCGUCGUagaCGU-CCACG- -5'
5514 5' -58.9 NC_001798.1 + 26930 0.71 0.49425
Target:  5'- gGGUCgGgCGGGCGGgGUCgggcggGCGGGggucggGCg -3'
miRNA:   3'- -CCAGgC-GCCCGUCgUAGa-----CGUCCa-----CG- -5'
5514 5' -58.9 NC_001798.1 + 34581 0.71 0.5037
Target:  5'- cGGcUCaCGCGGcGCGGCGUCUcGguGGgacGCg -3'
miRNA:   3'- -CC-AG-GCGCC-CGUCGUAGA-CguCCa--CG- -5'
5514 5' -58.9 NC_001798.1 + 1222 0.71 0.513227
Target:  5'- cGGcCCGCGGccgacgccCAGCGuaUCUGCGGGgGCg -3'
miRNA:   3'- -CCaGGCGCCc-------GUCGU--AGACGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 25901 0.71 0.520902
Target:  5'- uGGUCuCGC-GGCAGCAcgccuaccuggcCUGCgAGGUGCu -3'
miRNA:   3'- -CCAG-GCGcCCGUCGUa-----------GACG-UCCACG- -5'
5514 5' -58.9 NC_001798.1 + 51459 0.7 0.531527
Target:  5'- cGGUCgagauucuCGCGGGCcGCGUgucgggcccggagCUGCAGGcgGCa -3'
miRNA:   3'- -CCAG--------GCGCCCGuCGUA-------------GACGUCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 62275 0.7 0.55202
Target:  5'- aGGcCCGcCGGGCGGCccg-GCGGGaGCg -3'
miRNA:   3'- -CCaGGC-GCCCGUCGuagaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 148296 0.7 0.561863
Target:  5'- aGGUgUGCGGGCGGgGUggGguGaGUGCg -3'
miRNA:   3'- -CCAgGCGCCCGUCgUAgaCguC-CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.