miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5514 5' -58.9 NC_001798.1 + 69 0.66 0.768645
Target:  5'- ----gGCGGGCGGCGgcgGCGGGcggGCg -3'
miRNA:   3'- ccaggCGCCCGUCGUagaCGUCCa--CG- -5'
5514 5' -58.9 NC_001798.1 + 1222 0.71 0.513227
Target:  5'- cGGcCCGCGGccgacgccCAGCGuaUCUGCGGGgGCg -3'
miRNA:   3'- -CCaGGCGCCc-------GUCGU--AGACGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 1265 0.67 0.749937
Target:  5'- cGUCCGCGucgucgcGCAGCAcCaGCGGGgGCg -3'
miRNA:   3'- cCAGGCGCc------CGUCGUaGaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 1777 0.69 0.641772
Target:  5'- --aCgGCGGGCAGCAcCUcGCAGGccagguagGCg -3'
miRNA:   3'- ccaGgCGCCCGUCGUaGA-CGUCCa-------CG- -5'
5514 5' -58.9 NC_001798.1 + 2486 0.67 0.749937
Target:  5'- gGGcCgGCGGGuCAGCG-CcGCGGG-GCg -3'
miRNA:   3'- -CCaGgCGCCC-GUCGUaGaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 2516 0.77 0.236259
Target:  5'- cGG-CCGCGGcgGCGGCGUCgGCGGG-GCg -3'
miRNA:   3'- -CCaGGCGCC--CGUCGUAGaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 2556 0.67 0.74043
Target:  5'- --cCCGCgggagGGGCGGCcgCgggGCGGGggGCg -3'
miRNA:   3'- ccaGGCG-----CCCGUCGuaGa--CGUCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 2704 0.68 0.701576
Target:  5'- cGG-CCGCGGcGaCGGUGUCggccaGCAGGggGCg -3'
miRNA:   3'- -CCaGGCGCC-C-GUCGUAGa----CGUCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 2760 0.75 0.305041
Target:  5'- aGGUCCGCGgcGGCGGCGgcggcggagcUCaGCAGGcGCg -3'
miRNA:   3'- -CCAGGCGC--CCGUCGU----------AGaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 2993 0.66 0.777828
Target:  5'- cGGcCCGCGGGCcccgggcgcgggGGCG-CgGCGGGccggGCu -3'
miRNA:   3'- -CCaGGCGCCCG------------UCGUaGaCGUCCa---CG- -5'
5514 5' -58.9 NC_001798.1 + 4207 0.68 0.701576
Target:  5'- uGGUCUGCGGcGCuGGCGggggcGCGGGcgGCg -3'
miRNA:   3'- -CCAGGCGCC-CG-UCGUaga--CGUCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 5610 0.78 0.197672
Target:  5'- uGGUCCGCGGGCGGC-UCcgccccaaaggggGCGGGgccGCa -3'
miRNA:   3'- -CCAGGCGCCCGUCGuAGa------------CGUCCa--CG- -5'
5514 5' -58.9 NC_001798.1 + 9157 0.66 0.80459
Target:  5'- cGGcgCCGCccgcgccgggGGGCAGgGUCUcugGCGGGUccccGCg -3'
miRNA:   3'- -CCa-GGCG----------CCCGUCgUAGA---CGUCCA----CG- -5'
5514 5' -58.9 NC_001798.1 + 12703 0.71 0.484882
Target:  5'- cGGguugCUGgGGGCGGCGgggGCGuGGUGCg -3'
miRNA:   3'- -CCa---GGCgCCCGUCGUagaCGU-CCACG- -5'
5514 5' -58.9 NC_001798.1 + 15229 0.72 0.457306
Target:  5'- gGGUCCGUGuGGguGCGUCUuuGGGUcCg -3'
miRNA:   3'- -CCAGGCGC-CCguCGUAGAcgUCCAcG- -5'
5514 5' -58.9 NC_001798.1 + 15462 0.68 0.681777
Target:  5'- gGGUCgCGUGGGUAGaCGUggGCGGGgggGUc -3'
miRNA:   3'- -CCAG-GCGCCCGUC-GUAgaCGUCCa--CG- -5'
5514 5' -58.9 NC_001798.1 + 15880 0.68 0.701576
Target:  5'- uGUCCGCaGGGC-GCGUCgaaaccgcggGCGGG-GUg -3'
miRNA:   3'- cCAGGCG-CCCGuCGUAGa---------CGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 16063 0.71 0.475599
Target:  5'- aGGUCgcUGgGGGCGGCGggcgUCUGUGGGgGCa -3'
miRNA:   3'- -CCAG--GCgCCCGUCGU----AGACGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 25508 0.67 0.749937
Target:  5'- --gCCGCGcGGCGGCcuggaUGCgccAGGUGCc -3'
miRNA:   3'- ccaGGCGC-CCGUCGuag--ACG---UCCACG- -5'
5514 5' -58.9 NC_001798.1 + 25901 0.71 0.520902
Target:  5'- uGGUCuCGC-GGCAGCAcgccuaccuggcCUGCgAGGUGCu -3'
miRNA:   3'- -CCAG-GCGcCCGUCGUa-----------GACG-UCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.