miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5514 5' -58.9 NC_001798.1 + 2486 0.67 0.749937
Target:  5'- gGGcCgGCGGGuCAGCG-CcGCGGG-GCg -3'
miRNA:   3'- -CCaGgCGCCC-GUCGUaGaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 25508 0.67 0.749937
Target:  5'- --gCCGCGcGGCGGCcuggaUGCgccAGGUGCc -3'
miRNA:   3'- ccaGGCGC-CCGUCGuag--ACG---UCCACG- -5'
5514 5' -58.9 NC_001798.1 + 1265 0.67 0.749937
Target:  5'- cGUCCGCGucgucgcGCAGCAcCaGCGGGgGCg -3'
miRNA:   3'- cCAGGCGCc------CGUCGUaGaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 2556 0.67 0.74043
Target:  5'- --cCCGCgggagGGGCGGCcgCgggGCGGGggGCg -3'
miRNA:   3'- ccaGGCG-----CCCGUCGuaGa--CGUCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 69199 0.67 0.74043
Target:  5'- aGGUCgGUGGGguGCc---GCAGG-GCc -3'
miRNA:   3'- -CCAGgCGCCCguCGuagaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 56406 0.67 0.74043
Target:  5'- gGGUCCcgcgGCGGG-GGCugguggCUGCcguGGUGCu -3'
miRNA:   3'- -CCAGG----CGCCCgUCGua----GACGu--CCACG- -5'
5514 5' -58.9 NC_001798.1 + 31275 0.67 0.73083
Target:  5'- gGGUCUGgGGGCGGCccugccGUC-GCGGccgucGUGCc -3'
miRNA:   3'- -CCAGGCgCCCGUCG------UAGaCGUC-----CACG- -5'
5514 5' -58.9 NC_001798.1 + 26518 0.67 0.73083
Target:  5'- uGGccgCgGCGGGCGGCGgcgUGgAGGUGg -3'
miRNA:   3'- -CCa--GgCGCCCGUCGUag-ACgUCCACg -5'
5514 5' -58.9 NC_001798.1 + 114866 0.67 0.73083
Target:  5'- ---gCGCGGGCGGCcgGUCgacgGGGUGCu -3'
miRNA:   3'- ccagGCGCCCGUCG--UAGacg-UCCACG- -5'
5514 5' -58.9 NC_001798.1 + 148384 0.67 0.73083
Target:  5'- aGGg--GCGGGCguGGCGg--GCAGGUGUg -3'
miRNA:   3'- -CCaggCGCCCG--UCGUagaCGUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 136596 0.67 0.725031
Target:  5'- aGUCCGUgcgggggacGGGCccgGGCAacugcaacgcagagcUCUGCGGGgugGCg -3'
miRNA:   3'- cCAGGCG---------CCCG---UCGU---------------AGACGUCCa--CG- -5'
5514 5' -58.9 NC_001798.1 + 36072 0.67 0.721149
Target:  5'- aGG-CUGCGGGC-GCGgg-GUAGGUGg -3'
miRNA:   3'- -CCaGGCGCCCGuCGUagaCGUCCACg -5'
5514 5' -58.9 NC_001798.1 + 153803 0.67 0.721149
Target:  5'- cGG-CgGCGGGgGGCAggcggCgGCAGGcGCg -3'
miRNA:   3'- -CCaGgCGCCCgUCGUa----GaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 116710 0.67 0.711395
Target:  5'- cGUCguCGaCGGGCccgccauGCucacgCUGCAGGUGCu -3'
miRNA:   3'- cCAG--GC-GCCCGu------CGua---GACGUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 84502 0.67 0.711395
Target:  5'- cGUCCccCGGGCGGCcgCcGUAGG-GCu -3'
miRNA:   3'- cCAGGc-GCCCGUCGuaGaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 32061 0.67 0.708456
Target:  5'- cGUCCGCGGGCgccgcgcccccgucGGCGUCUccgucguccCAGGccGCg -3'
miRNA:   3'- cCAGGCGCCCG--------------UCGUAGAc--------GUCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 2704 0.68 0.701576
Target:  5'- cGG-CCGCGGcGaCGGUGUCggccaGCAGGggGCg -3'
miRNA:   3'- -CCaGGCGCC-C-GUCGUAGa----CGUCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 15880 0.68 0.701576
Target:  5'- uGUCCGCaGGGC-GCGUCgaaaccgcggGCGGG-GUg -3'
miRNA:   3'- cCAGGCG-CCCGuCGUAGa---------CGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 4207 0.68 0.701576
Target:  5'- uGGUCUGCGGcGCuGGCGggggcGCGGGcgGCg -3'
miRNA:   3'- -CCAGGCGCC-CG-UCGUaga--CGUCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 31146 0.68 0.6917
Target:  5'- cGG-CgCGgGGGCGGCGg-UGCGGGgGCg -3'
miRNA:   3'- -CCaG-GCgCCCGUCGUagACGUCCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.