miRNA: 3'- gCAAGCUAgaUCGUGUGGGUGCCCag -5'
miRNA: 3'- gCaaGCUAgAUCGUGUG-GGUGCCCAG- -5'
Results 21 - 22 of 22 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5515 | 3' | -54.1 | NC_001798.1 | + | 44620 | 0.73 | 0.640507 |
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Target: 5'- uGUUCGGUg-GGCGCGCCCGUGGGg- -3' miRNA: 3'- gCAAGCUAgaUCGUGUGGGUGCCCag -5' |
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| 5515 | 3' | -54.1 | NC_001798.1 | + | 66024 | 0.81 | 0.290238 |
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Target: 5'- aGggCGAUgUGGCGCAUgCCGCGGGUCg -3' miRNA: 3'- gCaaGCUAgAUCGUGUG-GGUGCCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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