miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5515 5' -56.9 NC_001798.1 + 66802 0.68 0.806115
Target:  5'- cCGACgCGCGcGGGUCCG-UCGCGg-- -3'
miRNA:   3'- aGCUGaGCGC-CCUAGGCuAGCGUgca -5'
5515 5' -56.9 NC_001798.1 + 97253 0.68 0.806115
Target:  5'- gCGGCggGCGGaGcacUUCGAUCGCGCGUu -3'
miRNA:   3'- aGCUGagCGCC-Cu--AGGCUAGCGUGCA- -5'
5515 5' -56.9 NC_001798.1 + 38234 0.68 0.806115
Target:  5'- -aGGCaCGCGGGGUCCGuuUUGguCGUg -3'
miRNA:   3'- agCUGaGCGCCCUAGGCu-AGCguGCA- -5'
5515 5' -56.9 NC_001798.1 + 81932 0.68 0.797366
Target:  5'- cUCGGCUCGCGGGGccuuUCCcGcccccacgcUCGCGCc- -3'
miRNA:   3'- -AGCUGAGCGCCCU----AGGcU---------AGCGUGca -5'
5515 5' -56.9 NC_001798.1 + 135076 0.69 0.779446
Target:  5'- cCGcCUUuCGGGAagCGGUCGCGCGg -3'
miRNA:   3'- aGCuGAGcGCCCUagGCUAGCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 114859 0.69 0.770291
Target:  5'- cCGACacgCGCGGGcggCCGGUCG-ACGg -3'
miRNA:   3'- aGCUGa--GCGCCCua-GGCUAGCgUGCa -5'
5515 5' -56.9 NC_001798.1 + 50652 0.69 0.752578
Target:  5'- aCGGCUCGUggugcuGGGGUCCGcguauaaaggcaggCGCGCGg -3'
miRNA:   3'- aGCUGAGCG------CCCUAGGCua------------GCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 139379 0.7 0.693519
Target:  5'- -gGGCUCGCGGGAcgUCCGG--GCACc- -3'
miRNA:   3'- agCUGAGCGCCCU--AGGCUagCGUGca -5'
5515 5' -56.9 NC_001798.1 + 120396 0.71 0.673662
Target:  5'- gCGAUgucCGCGGGggCCGAUcccgugagCGCGCGg -3'
miRNA:   3'- aGCUGa--GCGCCCuaGGCUA--------GCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 83660 0.72 0.613561
Target:  5'- gCGGCUCGCGGGcGUCUGGgauGCACu- -3'
miRNA:   3'- aGCUGAGCGCCC-UAGGCUag-CGUGca -5'
5515 5' -56.9 NC_001798.1 + 16176 0.72 0.593556
Target:  5'- gCGGCcCGCGGGGaCCGGggggaCGCACGg -3'
miRNA:   3'- aGCUGaGCGCCCUaGGCUa----GCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 73970 0.72 0.563767
Target:  5'- gCGGC-CGCGGGcUCCGGgccgccgCGCAUGUg -3'
miRNA:   3'- aGCUGaGCGCCCuAGGCUa------GCGUGCA- -5'
5515 5' -56.9 NC_001798.1 + 150427 0.73 0.515106
Target:  5'- gCGGCggCGCGGGGcggacUCCGGaCGCGCGg -3'
miRNA:   3'- aGCUGa-GCGCCCU-----AGGCUaGCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.