miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5516 3' -70 NC_001798.1 + 116 0.78 0.045308
Target:  5'- cUUCCCCGUCCcUCCCCCgGaGCCGGCc -3'
miRNA:   3'- cAGGGGGCGGGcAGGGGGgC-CGGCCG- -5'
5516 3' -70 NC_001798.1 + 145 0.7 0.184972
Target:  5'- cUCCCCCgcgggcgccGCCCcUCCCCCCGcgcGCCgcggGGCu -3'
miRNA:   3'- cAGGGGG---------CGGGcAGGGGGGC---CGG----CCG- -5'
5516 3' -70 NC_001798.1 + 219 0.7 0.176751
Target:  5'- uUCCCgCGCCCG-CCCCC--GCgCGGCa -3'
miRNA:   3'- cAGGGgGCGGGCaGGGGGgcCG-GCCG- -5'
5516 3' -70 NC_001798.1 + 457 0.71 0.154012
Target:  5'- gGUCCCgCGgCCGccUCCCCCgCGGCCGc- -3'
miRNA:   3'- -CAGGGgGCgGGC--AGGGGG-GCCGGCcg -5'
5516 3' -70 NC_001798.1 + 511 0.85 0.015212
Target:  5'- uUCCCCCGCCCcUCCCCCCGcGCCcGCg -3'
miRNA:   3'- cAGGGGGCGGGcAGGGGGGC-CGGcCG- -5'
5516 3' -70 NC_001798.1 + 688 0.71 0.150489
Target:  5'- -aCCCCCGCCCGcCCgaCCCCcGCCcGCc -3'
miRNA:   3'- caGGGGGCGGGCaGG--GGGGcCGGcCG- -5'
5516 3' -70 NC_001798.1 + 718 0.71 0.150489
Target:  5'- -aCCCCCGCCCGcCCgaCCCCcGCCcGCc -3'
miRNA:   3'- caGGGGGCGGGCaGG--GGGGcCGGcCG- -5'
5516 3' -70 NC_001798.1 + 748 0.71 0.150489
Target:  5'- -aCCCCCGCCCGcCCgaCCCCcGCCcGCc -3'
miRNA:   3'- caGGGGGCGGGCaGG--GGGGcCGGcCG- -5'
5516 3' -70 NC_001798.1 + 778 0.71 0.150489
Target:  5'- -aCCCCCGCCCGcCCgaCCCCcGCCcGCc -3'
miRNA:   3'- caGGGGGCGGGCaGG--GGGGcCGGcCG- -5'
5516 3' -70 NC_001798.1 + 808 0.71 0.150489
Target:  5'- -aCCCCCGCCCGcCCgaCCCCcGCCcGCc -3'
miRNA:   3'- caGGGGGCGGGCaGG--GGGGcCGGcCG- -5'
5516 3' -70 NC_001798.1 + 838 0.71 0.150489
Target:  5'- -aCCCCCGCCCGcCCgaCCCCcGCCcGCc -3'
miRNA:   3'- caGGGGGCGGGCaGG--GGGGcCGGcCG- -5'
5516 3' -70 NC_001798.1 + 868 0.71 0.150489
Target:  5'- -aCCCCCGCCCGcCCgaCCCCcGCCcGCc -3'
miRNA:   3'- caGGGGGCGGGCaGG--GGGGcCGGcCG- -5'
5516 3' -70 NC_001798.1 + 898 0.69 0.22475
Target:  5'- -aCCCCCGCCCGcccgaCCCCCGaauaaaccacacaaGgCGGUa -3'
miRNA:   3'- caGGGGGCGGGCag---GGGGGC--------------CgGCCG- -5'
5516 3' -70 NC_001798.1 + 1194 0.68 0.252392
Target:  5'- -gCCCgCCGCggccagcaCCGUCCCCgCgCGGCCcGCg -3'
miRNA:   3'- caGGG-GGCG--------GGCAGGGG-G-GCCGGcCG- -5'
5516 3' -70 NC_001798.1 + 2108 0.66 0.345713
Target:  5'- -gCCCCCggcgcgGCCCGcggccaggUCCUcgCCCGGCagCGGCg -3'
miRNA:   3'- caGGGGG------CGGGC--------AGGG--GGGCCG--GCCG- -5'
5516 3' -70 NC_001798.1 + 2619 0.7 0.193528
Target:  5'- --gCgCCGCCCGgcggCgCCCUGGCCGGg -3'
miRNA:   3'- cagGgGGCGGGCa---GgGGGGCCGGCCg -5'
5516 3' -70 NC_001798.1 + 3163 0.66 0.327903
Target:  5'- -aCCgCCgGCgCCGUCgucgUcgucgucgucgucggCCCCGGCCGGCg -3'
miRNA:   3'- caGG-GGgCG-GGCAG----G---------------GGGGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 3251 0.67 0.31467
Target:  5'- -aCCCCCGCggcgccguagCCGgcgggcaccgcgcgCUCgUCGGCCGGCg -3'
miRNA:   3'- caGGGGGCG----------GGCa-------------GGGgGGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 3823 0.77 0.059315
Target:  5'- cUCCUCCGCCuCGggcgCCCCCCagaGGCCGGg -3'
miRNA:   3'- cAGGGGGCGG-GCa---GGGGGG---CCGGCCg -5'
5516 3' -70 NC_001798.1 + 3861 0.66 0.359878
Target:  5'- uGUCgCCCaGCCCG-CCguacagcacgcgCCCCgggggcggggGGCCGGCc -3'
miRNA:   3'- -CAGgGGG-CGGGCaGG------------GGGG----------CCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.