miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5517 3' -55.4 NC_001798.1 + 21592 1.07 0.00386
Target:  5'- gAAAAGGAACCGAUGCGCCCGCGUCUCu -3'
miRNA:   3'- -UUUUCCUUGGCUACGCGGGCGCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 79147 0.75 0.462644
Target:  5'- uGGAGGAGCUGG-GCGCgCGCGUCa- -3'
miRNA:   3'- uUUUCCUUGGCUaCGCGgGCGCAGag -5'
5517 3' -55.4 NC_001798.1 + 59831 0.74 0.501076
Target:  5'- -uGGGGcGCCGcgGuCGCCCGCGUC-Cg -3'
miRNA:   3'- uuUUCCuUGGCuaC-GCGGGCGCAGaG- -5'
5517 3' -55.4 NC_001798.1 + 36224 0.73 0.561135
Target:  5'- ----cGAccGCCGccGCGCCCGCGUUUCu -3'
miRNA:   3'- uuuucCU--UGGCuaCGCGGGCGCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 102654 0.72 0.591928
Target:  5'- cGGAGGGGCCGggGCGCCCGaUGcCg- -3'
miRNA:   3'- uUUUCCUUGGCuaCGCGGGC-GCaGag -5'
5517 3' -55.4 NC_001798.1 + 126078 0.72 0.601227
Target:  5'- cAGGAGGAgcagcucgaagagGCCGcgGCGaaCGCGUCUCu -3'
miRNA:   3'- -UUUUCCU-------------UGGCuaCGCggGCGCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 20773 0.72 0.632332
Target:  5'- --cGGGGAgCGAcgGCGCCCGCcgcguagGUCUCc -3'
miRNA:   3'- uuuUCCUUgGCUa-CGCGGGCG-------CAGAG- -5'
5517 3' -55.4 NC_001798.1 + 153767 0.72 0.63337
Target:  5'- cGGAAGGGGgCGcUGCgGCCCGCG-CUCc -3'
miRNA:   3'- -UUUUCCUUgGCuACG-CGGGCGCaGAG- -5'
5517 3' -55.4 NC_001798.1 + 56533 0.7 0.70551
Target:  5'- ---cGGuGCCGggGCGCCCGCacgauGUCUg -3'
miRNA:   3'- uuuuCCuUGGCuaCGCGGGCG-----CAGAg -5'
5517 3' -55.4 NC_001798.1 + 1251 0.7 0.745531
Target:  5'- --cGGGGGCgGGcccGCGUCCGCGUCgUCg -3'
miRNA:   3'- uuuUCCUUGgCUa--CGCGGGCGCAG-AG- -5'
5517 3' -55.4 NC_001798.1 + 3783 0.7 0.745531
Target:  5'- --cGGGcGCCGggGCGCCCGagGcCUCg -3'
miRNA:   3'- uuuUCCuUGGCuaCGCGGGCg-CaGAG- -5'
5517 3' -55.4 NC_001798.1 + 84791 0.69 0.764966
Target:  5'- aGGAGGGAggccaGCCGcUGCGUCCGCGa--- -3'
miRNA:   3'- -UUUUCCU-----UGGCuACGCGGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 137616 0.69 0.773559
Target:  5'- ---cGGAGCCGGUgaugagcGCGCCCGC-UCg- -3'
miRNA:   3'- uuuuCCUUGGCUA-------CGCGGGCGcAGag -5'
5517 3' -55.4 NC_001798.1 + 24807 0.69 0.793186
Target:  5'- ---uGGuGCUGAUGCGCCUGCG-Cg- -3'
miRNA:   3'- uuuuCCuUGGCUACGCGGGCGCaGag -5'
5517 3' -55.4 NC_001798.1 + 3603 0.68 0.811268
Target:  5'- uGAAGGAGCUGcuguUGCGCgCCGCGcC-Cg -3'
miRNA:   3'- uUUUCCUUGGCu---ACGCG-GGCGCaGaG- -5'
5517 3' -55.4 NC_001798.1 + 103003 0.68 0.820062
Target:  5'- --cGGGGGCCcaGGUGCGCCCggccaGCGcgagCUCg -3'
miRNA:   3'- uuuUCCUUGG--CUACGCGGG-----CGCa---GAG- -5'
5517 3' -55.4 NC_001798.1 + 32242 0.68 0.820062
Target:  5'- ---cGGGGCUGGUgggagcgucGCGUCCGCGUC-Cg -3'
miRNA:   3'- uuuuCCUUGGCUA---------CGCGGGCGCAGaG- -5'
5517 3' -55.4 NC_001798.1 + 22203 0.68 0.827827
Target:  5'- -cAGGGGAgCGAgccCGCCCGCGacgagggUCUCa -3'
miRNA:   3'- uuUUCCUUgGCUac-GCGGGCGC-------AGAG- -5'
5517 3' -55.4 NC_001798.1 + 149979 0.68 0.828681
Target:  5'- ---cGGGGgCGcgGCGCCCGCGg--- -3'
miRNA:   3'- uuuuCCUUgGCuaCGCGGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 151614 0.68 0.837116
Target:  5'- --cGGGGGCCGGgccggggGCGUggCCGCGUCcaUCa -3'
miRNA:   3'- uuuUCCUUGGCUa------CGCG--GGCGCAG--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.