miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5517 3' -55.4 NC_001798.1 + 1251 0.7 0.745531
Target:  5'- --cGGGGGCgGGcccGCGUCCGCGUCgUCg -3'
miRNA:   3'- uuuUCCUUGgCUa--CGCGGGCGCAG-AG- -5'
5517 3' -55.4 NC_001798.1 + 2575 0.66 0.890408
Target:  5'- ---cGGGGCgGGggGCGUCCGCGcggCUCu -3'
miRNA:   3'- uuuuCCUUGgCUa-CGCGGGCGCa--GAG- -5'
5517 3' -55.4 NC_001798.1 + 3603 0.68 0.811268
Target:  5'- uGAAGGAGCUGcuguUGCGCgCCGCGcC-Cg -3'
miRNA:   3'- uUUUCCUUGGCu---ACGCG-GGCGCaGaG- -5'
5517 3' -55.4 NC_001798.1 + 3783 0.7 0.745531
Target:  5'- --cGGGcGCCGggGCGCCCGagGcCUCg -3'
miRNA:   3'- uuuUCCuUGGCuaCGCGGGCg-CaGAG- -5'
5517 3' -55.4 NC_001798.1 + 4346 0.66 0.921605
Target:  5'- cAGAGGcGGCCGA-GCGCCgGCGg--- -3'
miRNA:   3'- uUUUCC-UUGGCUaCGCGGgCGCagag -5'
5517 3' -55.4 NC_001798.1 + 5286 0.67 0.861241
Target:  5'- gAGGAGGAgcgaucgacGCCGccGCGCCC-CGgCUCg -3'
miRNA:   3'- -UUUUCCU---------UGGCuaCGCGGGcGCaGAG- -5'
5517 3' -55.4 NC_001798.1 + 7572 0.67 0.876273
Target:  5'- --cGGGAuCCauaacGCGCCCGCGUC-Cg -3'
miRNA:   3'- uuuUCCUuGGcua--CGCGGGCGCAGaG- -5'
5517 3' -55.4 NC_001798.1 + 10325 0.67 0.876273
Target:  5'- gGGGGGGAacgcugACCGGcgUGCguucgucacGCCCGCGUCg- -3'
miRNA:   3'- -UUUUCCU------UGGCU--ACG---------CGGGCGCAGag -5'
5517 3' -55.4 NC_001798.1 + 20773 0.72 0.632332
Target:  5'- --cGGGGAgCGAcgGCGCCCGCcgcguagGUCUCc -3'
miRNA:   3'- uuuUCCUUgGCUa-CGCGGGCG-------CAGAG- -5'
5517 3' -55.4 NC_001798.1 + 21592 1.07 0.00386
Target:  5'- gAAAAGGAACCGAUGCGCCCGCGUCUCu -3'
miRNA:   3'- -UUUUCCUUGGCUACGCGGGCGCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 22203 0.68 0.827827
Target:  5'- -cAGGGGAgCGAgccCGCCCGCGacgagggUCUCa -3'
miRNA:   3'- uuUUCCUUgGCUac-GCGGGCGC-------AGAG- -5'
5517 3' -55.4 NC_001798.1 + 23549 0.67 0.861241
Target:  5'- -cGAGGAGgCGGggGUGCCCGCGa--- -3'
miRNA:   3'- uuUUCCUUgGCUa-CGCGGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 24807 0.69 0.793186
Target:  5'- ---uGGuGCUGAUGCGCCUGCG-Cg- -3'
miRNA:   3'- uuuuCCuUGGCUACGCGGGCGCaGag -5'
5517 3' -55.4 NC_001798.1 + 25723 0.66 0.890408
Target:  5'- ----uGGACCGgcGCcCCCGaCGUCUCg -3'
miRNA:   3'- uuuucCUUGGCuaCGcGGGC-GCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 25877 0.67 0.860467
Target:  5'- ---cGGAcuggcccGCCGAcGgGCCCGUgGUCUCg -3'
miRNA:   3'- uuuuCCU-------UGGCUaCgCGGGCG-CAGAG- -5'
5517 3' -55.4 NC_001798.1 + 27552 0.66 0.909851
Target:  5'- cGGGGGGAGggGcgGCGCCCGCGg--- -3'
miRNA:   3'- -UUUUCCUUggCuaCGCGGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 32242 0.68 0.820062
Target:  5'- ---cGGGGCUGGUgggagcgucGCGUCCGCGUC-Cg -3'
miRNA:   3'- uuuuCCUUGGCUA---------CGCGGGCGCAGaG- -5'
5517 3' -55.4 NC_001798.1 + 32777 0.67 0.853403
Target:  5'- --cGGGAGCagGgcGCGCCCGCGcCg- -3'
miRNA:   3'- uuuUCCUUGg-CuaCGCGGGCGCaGag -5'
5517 3' -55.4 NC_001798.1 + 36224 0.73 0.561135
Target:  5'- ----cGAccGCCGccGCGCCCGCGUUUCu -3'
miRNA:   3'- uuuucCU--UGGCuaCGCGGGCGCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 39415 0.66 0.897127
Target:  5'- ---cGGGACCGggGCGCggccguCCGCGUg-- -3'
miRNA:   3'- uuuuCCUUGGCuaCGCG------GGCGCAgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.