miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5517 3' -55.4 NC_001798.1 + 5286 0.67 0.861241
Target:  5'- gAGGAGGAgcgaucgacGCCGccGCGCCC-CGgCUCg -3'
miRNA:   3'- -UUUUCCU---------UGGCuaCGCGGGcGCaGAG- -5'
5517 3' -55.4 NC_001798.1 + 23549 0.67 0.861241
Target:  5'- -cGAGGAGgCGGggGUGCCCGCGa--- -3'
miRNA:   3'- uuUUCCUUgGCUa-CGCGGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 123409 0.67 0.861241
Target:  5'- --cGGGAGCCGcgGC-CCCGCcggGUCa- -3'
miRNA:   3'- uuuUCCUUGGCuaCGcGGGCG---CAGag -5'
5517 3' -55.4 NC_001798.1 + 25877 0.67 0.860467
Target:  5'- ---cGGAcuggcccGCCGAcGgGCCCGUgGUCUCg -3'
miRNA:   3'- uuuuCCU-------UGGCUaCgCGGGCG-CAGAG- -5'
5517 3' -55.4 NC_001798.1 + 32777 0.67 0.853403
Target:  5'- --cGGGAGCagGgcGCGCCCGCGcCg- -3'
miRNA:   3'- uuuUCCUUGg-CuaCGCGGGCGCaGag -5'
5517 3' -55.4 NC_001798.1 + 59556 0.67 0.853403
Target:  5'- gAGAGGGGGCUGGg--GCUCGCGUCg- -3'
miRNA:   3'- -UUUUCCUUGGCUacgCGGGCGCAGag -5'
5517 3' -55.4 NC_001798.1 + 85294 0.68 0.845359
Target:  5'- --cGGGGGCCGGggucCGCCCGCGg--- -3'
miRNA:   3'- uuuUCCUUGGCUac--GCGGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 121569 0.68 0.845359
Target:  5'- --uGGGcGACC--UGUGCCCGCGUgCUCc -3'
miRNA:   3'- uuuUCC-UUGGcuACGCGGGCGCA-GAG- -5'
5517 3' -55.4 NC_001798.1 + 151614 0.68 0.837116
Target:  5'- --cGGGGGCCGGgccggggGCGUggCCGCGUCcaUCa -3'
miRNA:   3'- uuuUCCUUGGCUa------CGCG--GGCGCAG--AG- -5'
5517 3' -55.4 NC_001798.1 + 87996 0.68 0.837116
Target:  5'- -cGGGGggUCGGcaUGCGaCgGCGUCUCc -3'
miRNA:   3'- uuUUCCuuGGCU--ACGCgGgCGCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 149979 0.68 0.828681
Target:  5'- ---cGGGGgCGcgGCGCCCGCGg--- -3'
miRNA:   3'- uuuuCCUUgGCuaCGCGGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 22203 0.68 0.827827
Target:  5'- -cAGGGGAgCGAgccCGCCCGCGacgagggUCUCa -3'
miRNA:   3'- uuUUCCUUgGCUac-GCGGGCGC-------AGAG- -5'
5517 3' -55.4 NC_001798.1 + 103003 0.68 0.820062
Target:  5'- --cGGGGGCCcaGGUGCGCCCggccaGCGcgagCUCg -3'
miRNA:   3'- uuuUCCUUGG--CUACGCGGG-----CGCa---GAG- -5'
5517 3' -55.4 NC_001798.1 + 32242 0.68 0.820062
Target:  5'- ---cGGGGCUGGUgggagcgucGCGUCCGCGUC-Cg -3'
miRNA:   3'- uuuuCCUUGGCUA---------CGCGGGCGCAGaG- -5'
5517 3' -55.4 NC_001798.1 + 3603 0.68 0.811268
Target:  5'- uGAAGGAGCUGcuguUGCGCgCCGCGcC-Cg -3'
miRNA:   3'- uUUUCCUUGGCu---ACGCG-GGCGCaGaG- -5'
5517 3' -55.4 NC_001798.1 + 24807 0.69 0.793186
Target:  5'- ---uGGuGCUGAUGCGCCUGCG-Cg- -3'
miRNA:   3'- uuuuCCuUGGCUACGCGGGCGCaGag -5'
5517 3' -55.4 NC_001798.1 + 137616 0.69 0.773559
Target:  5'- ---cGGAGCCGGUgaugagcGCGCCCGC-UCg- -3'
miRNA:   3'- uuuuCCUUGGCUA-------CGCGGGCGcAGag -5'
5517 3' -55.4 NC_001798.1 + 84791 0.69 0.764966
Target:  5'- aGGAGGGAggccaGCCGcUGCGUCCGCGa--- -3'
miRNA:   3'- -UUUUCCU-----UGGCuACGCGGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 3783 0.7 0.745531
Target:  5'- --cGGGcGCCGggGCGCCCGagGcCUCg -3'
miRNA:   3'- uuuUCCuUGGCuaCGCGGGCg-CaGAG- -5'
5517 3' -55.4 NC_001798.1 + 1251 0.7 0.745531
Target:  5'- --cGGGGGCgGGcccGCGUCCGCGUCgUCg -3'
miRNA:   3'- uuuUCCUUGgCUa--CGCGGGCGCAG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.