Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5517 | 5' | -61.5 | NC_001798.1 | + | 83848 | 0.66 | 0.743063 |
Target: 5'- cCCG-UCCGGGcgGCGcuggCGG-GCCCgagGCg -3' miRNA: 3'- -GGCuAGGCCCa-CGCa---GCCaCGGGg--CG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 83886 | 0.66 | 0.743063 |
Target: 5'- cCCGGcCCGGGcGCuccggaagagUGGUGCgCCGCc -3' miRNA: 3'- -GGCUaGGCCCaCGca--------GCCACGgGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 150341 | 0.66 | 0.751276 |
Target: 5'- gCGA-CCGGG-GCGcgCGGUGCgcguccaCCgGCa -3' miRNA: 3'- gGCUaGGCCCaCGCa-GCCACG-------GGgCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 42680 | 0.66 | 0.752184 |
Target: 5'- cUCGucgCCGGGaccaccgGCGUCGGggaaccaGuCCCCGUc -3' miRNA: 3'- -GGCua-GGCCCa------CGCAGCCa------C-GGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 3886 | 0.66 | 0.752184 |
Target: 5'- gCGccCCGGGgGCGggGGgccgGCCCCGg -3' miRNA: 3'- gGCuaGGCCCaCGCagCCa---CGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 121994 | 0.66 | 0.724569 |
Target: 5'- gCGGccUCCGGcGUcGCcUCGGgGCUCCGCc -3' miRNA: 3'- gGCU--AGGCC-CA-CGcAGCCaCGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 150466 | 0.66 | 0.724569 |
Target: 5'- gCCGcgCgGGG-GCGcgCGGcgcGCCCCGa -3' miRNA: 3'- -GGCuaGgCCCaCGCa-GCCa--CGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 32372 | 0.67 | 0.677231 |
Target: 5'- cCCGAgcCCGGGgcccGCGaccCGGcGCCCgGCc -3' miRNA: 3'- -GGCUa-GGCCCa---CGCa--GCCaCGGGgCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 65761 | 0.67 | 0.686794 |
Target: 5'- gCGGUgCCGGGgcugGCGUCGuUGaacgCCUGCa -3' miRNA: 3'- gGCUA-GGCCCa---CGCAGCcACg---GGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 48121 | 0.67 | 0.686794 |
Target: 5'- cCCGGguggCCGGGUucaacaagcGCGUCuucUGCgCCGCg -3' miRNA: 3'- -GGCUa---GGCCCA---------CGCAGcc-ACGgGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 133314 | 0.66 | 0.694416 |
Target: 5'- cUCGAUggCCGGG-GgGUCGGggcgaaccuuuaGCCCCGa -3' miRNA: 3'- -GGCUA--GGCCCaCgCAGCCa-----------CGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 25080 | 0.66 | 0.696317 |
Target: 5'- cCCGG-CCaGG-GCGccgccgggCGGcGCCCCGCg -3' miRNA: 3'- -GGCUaGGcCCaCGCa-------GCCaCGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 34999 | 0.66 | 0.696317 |
Target: 5'- uCCGG-CCGGG-GCGcaccUCGGcggccaaGCCCCGg -3' miRNA: 3'- -GGCUaGGCCCaCGC----AGCCa------CGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 75120 | 0.66 | 0.696317 |
Target: 5'- cCCGcaGUCCGGGcaggGCGgCGGcgacgacgGgCCCGCg -3' miRNA: 3'- -GGC--UAGGCCCa---CGCaGCCa-------CgGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 89128 | 0.66 | 0.696317 |
Target: 5'- cCCGGUCCGccuccaGGUGCG-CGacgGCCUCGg -3' miRNA: 3'- -GGCUAGGC------CCACGCaGCca-CGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 130767 | 0.66 | 0.696317 |
Target: 5'- aCCGGaCCGacgauacgauGGUGCGUCGGcGCCgggucaaucaggCCGUg -3' miRNA: 3'- -GGCUaGGC----------CCACGCAGCCaCGG------------GGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 31891 | 0.66 | 0.705793 |
Target: 5'- cCCGGaagaggCgCGGGU-CGgacUCGG-GCCCCGCg -3' miRNA: 3'- -GGCUa-----G-GCCCAcGC---AGCCaCGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 143358 | 0.66 | 0.714273 |
Target: 5'- cCCGGUCCGGcucuccgucgagaGgccccacgugcGCGUcCGGUGCggucCCCGCa -3' miRNA: 3'- -GGCUAGGCC-------------Ca----------CGCA-GCCACG----GGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 106042 | 0.66 | 0.715213 |
Target: 5'- gCCGugccuUCCGGGUcacGUGUCGGggagggggGCCUuUGCg -3' miRNA: 3'- -GGCu----AGGCCCA---CGCAGCCa-------CGGG-GCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 150852 | 0.66 | 0.715213 |
Target: 5'- gCCGGU-CGGGUcGCGgCGGgcugggagGUUCCGCg -3' miRNA: 3'- -GGCUAgGCCCA-CGCaGCCa-------CGGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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