miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5518 3' -51.6 NC_001798.1 + 143119 0.66 0.985259
Target:  5'- cGgCGGUGCUcCGCGCU-UGCgCUGGc- -3'
miRNA:   3'- -CgGUCACGA-GCGUGAaACGgGAUUau -5'
5518 3' -51.6 NC_001798.1 + 121146 0.66 0.983357
Target:  5'- gGCCGG-GCcaugaacgCGCACUUUGCCa----- -3'
miRNA:   3'- -CGGUCaCGa-------GCGUGAAACGGgauuau -5'
5518 3' -51.6 NC_001798.1 + 84714 0.66 0.979003
Target:  5'- cGCC-GUGCaCGCACgcggUGUCCUGc-- -3'
miRNA:   3'- -CGGuCACGaGCGUGaa--ACGGGAUuau -5'
5518 3' -51.6 NC_001798.1 + 41804 0.66 0.979003
Target:  5'- uCCGG-GCcgUCGCGCgacUUGCCCUGc-- -3'
miRNA:   3'- cGGUCaCG--AGCGUGa--AACGGGAUuau -5'
5518 3' -51.6 NC_001798.1 + 24463 0.67 0.973858
Target:  5'- cGCCgcgggGGUGCUCGCc----GCCCUGGg- -3'
miRNA:   3'- -CGG-----UCACGAGCGugaaaCGGGAUUau -5'
5518 3' -51.6 NC_001798.1 + 52431 0.67 0.967854
Target:  5'- gGCC-GUGUaCGCGCUgcacacgGCCCUGGc- -3'
miRNA:   3'- -CGGuCACGaGCGUGAaa-----CGGGAUUau -5'
5518 3' -51.6 NC_001798.1 + 77224 0.67 0.960931
Target:  5'- gGCC-GUGCgggCGCAUggcGCCCUGGc- -3'
miRNA:   3'- -CGGuCACGa--GCGUGaaaCGGGAUUau -5'
5518 3' -51.6 NC_001798.1 + 120493 0.67 0.960931
Target:  5'- uGCCGGUGCcggaggCGCGCguguugGCCgUGAa- -3'
miRNA:   3'- -CGGUCACGa-----GCGUGaaa---CGGgAUUau -5'
5518 3' -51.6 NC_001798.1 + 35610 0.68 0.939306
Target:  5'- uCCGGggGCUcCGCACUcUGCCCg---- -3'
miRNA:   3'- cGGUCa-CGA-GCGUGAaACGGGauuau -5'
5518 3' -51.6 NC_001798.1 + 5807 0.69 0.904779
Target:  5'- cGCgaAGcGUUCGCACUUcGUCCUAAUAg -3'
miRNA:   3'- -CGg-UCaCGAGCGUGAAaCGGGAUUAU- -5'
5518 3' -51.6 NC_001798.1 + 5669 0.69 0.904779
Target:  5'- cGCgaAGcGUUCGCACUUcGUCCUAAUAg -3'
miRNA:   3'- -CGg-UCaCGAGCGUGAAaCGGGAUUAU- -5'
5518 3' -51.6 NC_001798.1 + 70560 0.7 0.891189
Target:  5'- cGCCGG-GCUgCGCACcacggcgGCCCUGGg- -3'
miRNA:   3'- -CGGUCaCGA-GCGUGaaa----CGGGAUUau -5'
5518 3' -51.6 NC_001798.1 + 119230 0.72 0.799852
Target:  5'- cCCGGcUGCUCGCGCUgagcGCCCa---- -3'
miRNA:   3'- cGGUC-ACGAGCGUGAaa--CGGGauuau -5'
5518 3' -51.6 NC_001798.1 + 91694 0.77 0.508426
Target:  5'- cGCgaAGcGUUCGCACUUUGUCCUAAUAg -3'
miRNA:   3'- -CGg-UCaCGAGCGUGAAACGGGAUUAU- -5'
5518 3' -51.6 NC_001798.1 + 21992 1.01 0.02052
Target:  5'- cGCCAGcGCUCGCACUUUGCCCUAAUAa -3'
miRNA:   3'- -CGGUCaCGAGCGUGAAACGGGAUUAU- -5'
5518 3' -51.6 NC_001798.1 + 21855 1.1 0.005241
Target:  5'- cGCCAGUGCUCGCACUUUGCCCUAAUAa -3'
miRNA:   3'- -CGGUCACGAGCGUGAAACGGGAUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.