miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5519 3' -56.4 NC_001798.1 + 22227 1.09 0.002541
Target:  5'- gAGGGUCUCAUUAGCAUCGCGGGCGGAa -3'
miRNA:   3'- -UCCCAGAGUAAUCGUAGCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 145785 0.75 0.402024
Target:  5'- cGGGGUCcacaCAggAGCG-CGCGGGCGGc -3'
miRNA:   3'- -UCCCAGa---GUaaUCGUaGCGCCCGCCu -5'
5519 3' -56.4 NC_001798.1 + 5434 0.75 0.410628
Target:  5'- cGGcaUCUCAUUAGCGcccggCGCGGGCGGc -3'
miRNA:   3'- uCCc-AGAGUAAUCGUa----GCGCCCGCCu -5'
5519 3' -56.4 NC_001798.1 + 146082 0.75 0.437112
Target:  5'- aGGGGUC-Cgg-GGCGagGCGGGCGGGc -3'
miRNA:   3'- -UCCCAGaGuaaUCGUagCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 15460 0.74 0.473896
Target:  5'- gGGGGUCgCGUgGGUAgaCGUGGGCGGGg -3'
miRNA:   3'- -UCCCAGaGUAaUCGUa-GCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 26808 0.72 0.551656
Target:  5'- gGGGGUCgggCGggcgGGgGUCggGCGGGCGGGg -3'
miRNA:   3'- -UCCCAGa--GUaa--UCgUAG--CGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 26853 0.72 0.551656
Target:  5'- gGGGGUCgggCGggcgGGgGUCggGCGGGCGGGg -3'
miRNA:   3'- -UCCCAGa--GUaa--UCgUAG--CGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 26898 0.72 0.551656
Target:  5'- gGGGGUCgggCGggcgGGgGUCggGCGGGCGGGg -3'
miRNA:   3'- -UCCCAGa--GUaa--UCgUAG--CGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 26957 0.72 0.551656
Target:  5'- gGGGGUCgggCGggcgGGgGUCggGCGGGCGGGg -3'
miRNA:   3'- -UCCCAGa--GUaa--UCgUAG--CGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 27002 0.72 0.551656
Target:  5'- gGGGGUCgggCGggcgGGgGUCggGCGGGCGGGg -3'
miRNA:   3'- -UCCCAGa--GUaa--UCgUAG--CGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 63250 0.72 0.56168
Target:  5'- gAGGGgaaagcUGGCGUCGgGGGCGGGg -3'
miRNA:   3'- -UCCCagaguaAUCGUAGCgCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 45920 0.72 0.571752
Target:  5'- cGGGUCUCGgggggUGGCgGUCGCGucCGGAa -3'
miRNA:   3'- uCCCAGAGUa----AUCG-UAGCGCccGCCU- -5'
5519 3' -56.4 NC_001798.1 + 30942 0.71 0.6124
Target:  5'- gGGGGUCg----GGCGggggGCGGGCGGGg -3'
miRNA:   3'- -UCCCAGaguaaUCGUag--CGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 148276 0.71 0.622618
Target:  5'- gAGGGgCgggCGUggcgGGCAggugUGCGGGCGGGg -3'
miRNA:   3'- -UCCCaGa--GUAa---UCGUa---GCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 148383 0.71 0.622618
Target:  5'- gAGGGgCgggCGUggcgGGCAggugUGCGGGCGGGg -3'
miRNA:   3'- -UCCCaGa--GUAa---UCGUa---GCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 83650 0.71 0.622618
Target:  5'- gAGGGgaugugcggCUCGcgGGCGUCugggaugcacugGCGGGCGGGa -3'
miRNA:   3'- -UCCCa--------GAGUaaUCGUAG------------CGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 147158 0.71 0.653281
Target:  5'- gGGGGUCcCGggUAGCcgcccggCGcCGGGCGGAa -3'
miRNA:   3'- -UCCCAGaGUa-AUCGua-----GC-GCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 15873 0.7 0.683792
Target:  5'- cGGGGUCUguccgCAggGcGCGUcgaaacCGCGGGCGGGg -3'
miRNA:   3'- -UCCCAGA-----GUaaU-CGUA------GCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 105597 0.7 0.693889
Target:  5'- cGGGUC-CAUguucgagGGCG--GCGGGCGGGc -3'
miRNA:   3'- uCCCAGaGUAa------UCGUagCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 32428 0.7 0.703934
Target:  5'- gGGGGUCUCG--AGCGUCGUGgcccuGGCGc- -3'
miRNA:   3'- -UCCCAGAGUaaUCGUAGCGC-----CCGCcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.