miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5519 3' -56.4 NC_001798.1 + 4205 0.69 0.75307
Target:  5'- cGuGGUCUgCGgcgcUGGCGggggCGCGGGCGGc -3'
miRNA:   3'- uC-CCAGA-GUa---AUCGUa---GCGCCCGCCu -5'
5519 3' -56.4 NC_001798.1 + 5434 0.75 0.410628
Target:  5'- cGGcaUCUCAUUAGCGcccggCGCGGGCGGc -3'
miRNA:   3'- uCCc-AGAGUAAUCGUa----GCGCCCGCCu -5'
5519 3' -56.4 NC_001798.1 + 5596 0.66 0.873055
Target:  5'- cGaGGUCgcccCGUUGGUc-CGCGGGCGGc -3'
miRNA:   3'- uC-CCAGa---GUAAUCGuaGCGCCCGCCu -5'
5519 3' -56.4 NC_001798.1 + 9687 0.69 0.73367
Target:  5'- gGGGGcUCUCAcguGCGg-GCGGGUGGGc -3'
miRNA:   3'- -UCCC-AGAGUaauCGUagCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 11615 0.67 0.865666
Target:  5'- cGGGGcuaUCUCGcc-GC-UCGCGGGCGcGGg -3'
miRNA:   3'- -UCCC---AGAGUaauCGuAGCGCCCGC-CU- -5'
5519 3' -56.4 NC_001798.1 + 11672 0.66 0.896541
Target:  5'- cGGGUCUCGgggggaggacgggGGUGUCGUuguccguggagGGGUGGGu -3'
miRNA:   3'- uCCCAGAGUaa-----------UCGUAGCG-----------CCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 15460 0.74 0.473896
Target:  5'- gGGGGUCgCGUgGGUAgaCGUGGGCGGGg -3'
miRNA:   3'- -UCCCAGaGUAaUCGUa-GCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 15873 0.7 0.683792
Target:  5'- cGGGGUCUguccgCAggGcGCGUcgaaacCGCGGGCGGGg -3'
miRNA:   3'- -UCCCAGA-----GUaaU-CGUA------GCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 22227 1.09 0.002541
Target:  5'- gAGGGUCUCAUUAGCAUCGCGGGCGGAa -3'
miRNA:   3'- -UCCCAGAGUAAUCGUAGCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 22272 0.69 0.760715
Target:  5'- cGGGcgCUaaugagauGCcgCGCGGGCGGAg -3'
miRNA:   3'- uCCCa-GAguaau---CGuaGCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 26808 0.72 0.551656
Target:  5'- gGGGGUCgggCGggcgGGgGUCggGCGGGCGGGg -3'
miRNA:   3'- -UCCCAGa--GUaa--UCgUAG--CGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 26853 0.72 0.551656
Target:  5'- gGGGGUCgggCGggcgGGgGUCggGCGGGCGGGg -3'
miRNA:   3'- -UCCCAGa--GUaa--UCgUAG--CGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 26898 0.72 0.551656
Target:  5'- gGGGGUCgggCGggcgGGgGUCggGCGGGCGGGg -3'
miRNA:   3'- -UCCCAGa--GUaa--UCgUAG--CGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 26929 0.67 0.850263
Target:  5'- nGGGUCgggcgGGCGggGuCGGGCGGGc -3'
miRNA:   3'- uCCCAGaguaaUCGUagC-GCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 26957 0.72 0.551656
Target:  5'- gGGGGUCgggCGggcgGGgGUCggGCGGGCGGGg -3'
miRNA:   3'- -UCCCAGa--GUaa--UCgUAG--CGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 27002 0.72 0.551656
Target:  5'- gGGGGUCgggCGggcgGGgGUCggGCGGGCGGGg -3'
miRNA:   3'- -UCCCAGa--GUaa--UCgUAG--CGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 29862 0.68 0.797756
Target:  5'- cGGGUCUCAggcccccccUUuuccccggaccacccGGCugcggguugggggugGUCGCGGGCGGu -3'
miRNA:   3'- uCCCAGAGU---------AA---------------UCG---------------UAGCGCCCGCCu -5'
5519 3' -56.4 NC_001798.1 + 30942 0.71 0.6124
Target:  5'- gGGGGUCg----GGCGggggGCGGGCGGGg -3'
miRNA:   3'- -UCCCAGaguaaUCGUag--CGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 30975 0.66 0.88023
Target:  5'- gGGGGUCgggcgGGgGUCGggcggggguCGGGCGGGg -3'
miRNA:   3'- -UCCCAGaguaaUCgUAGC---------GCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 31019 0.66 0.88023
Target:  5'- gGGGGUCgggcgGGgGUCGggcggggguCGGGCGGGg -3'
miRNA:   3'- -UCCCAGaguaaUCgUAGC---------GCCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.