miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5519 3' -56.4 NC_001798.1 + 22227 1.09 0.002541
Target:  5'- gAGGGUCUCAUUAGCAUCGCGGGCGGAa -3'
miRNA:   3'- -UCCCAGAGUAAUCGUAGCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 143657 0.67 0.825696
Target:  5'- cGGGUUUCGaggUAGCGauUCGCGGcGaGGAa -3'
miRNA:   3'- uCCCAGAGUa--AUCGU--AGCGCC-CgCCU- -5'
5519 3' -56.4 NC_001798.1 + 34305 0.68 0.817145
Target:  5'- cGGGUU-----GGC-UCGCGGGCGGu -3'
miRNA:   3'- uCCCAGaguaaUCGuAGCGCCCGCCu -5'
5519 3' -56.4 NC_001798.1 + 99249 0.68 0.813678
Target:  5'- gGGGGUggcacaccaccgacCUCA--AGUAcaaccccUCGCGGGUGGAg -3'
miRNA:   3'- -UCCCA--------------GAGUaaUCGU-------AGCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 29862 0.68 0.797756
Target:  5'- cGGGUCUCAggcccccccUUuuccccggaccacccGGCugcggguugggggugGUCGCGGGCGGu -3'
miRNA:   3'- uCCCAGAGU---------AA---------------UCG---------------UAGCGCCCGCCu -5'
5519 3' -56.4 NC_001798.1 + 111821 0.68 0.790521
Target:  5'- cGGGcGUC-CAggGGCuggCGCgGGGCGGGa -3'
miRNA:   3'- -UCC-CAGaGUaaUCGua-GCG-CCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 72674 0.68 0.790521
Target:  5'- gAGGGUaaCGUgcUGGcCGUCGUGcGGCGGGa -3'
miRNA:   3'- -UCCCAgaGUA--AUC-GUAGCGC-CCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 22272 0.69 0.760715
Target:  5'- cGGGcgCUaaugagauGCcgCGCGGGCGGAg -3'
miRNA:   3'- uCCCa-GAguaau---CGuaGCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 4205 0.69 0.75307
Target:  5'- cGuGGUCUgCGgcgcUGGCGggggCGCGGGCGGc -3'
miRNA:   3'- uC-CCAGA-GUa---AUCGUa---GCGCCCGCCu -5'
5519 3' -56.4 NC_001798.1 + 35790 0.67 0.842262
Target:  5'- uGGGUCUCcuucgucgGGCggCGgGGGgGGGg -3'
miRNA:   3'- uCCCAGAGuaa-----UCGuaGCgCCCgCCU- -5'
5519 3' -56.4 NC_001798.1 + 102045 0.67 0.842262
Target:  5'- gGGGGUCUCcgUGucuGCGUgG-GGGUGGu -3'
miRNA:   3'- -UCCCAGAGuaAU---CGUAgCgCCCGCCu -5'
5519 3' -56.4 NC_001798.1 + 134349 0.67 0.842262
Target:  5'- gAGGGUCgaaagGGCGUCGUGGGgcccgcCGGc -3'
miRNA:   3'- -UCCCAGaguaaUCGUAGCGCCC------GCCu -5'
5519 3' -56.4 NC_001798.1 + 31019 0.66 0.88023
Target:  5'- gGGGGUCgggcgGGgGUCGggcggggguCGGGCGGGg -3'
miRNA:   3'- -UCCCAGaguaaUCgUAGC---------GCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 30975 0.66 0.88023
Target:  5'- gGGGGUCgggcgGGgGUCGggcggggguCGGGCGGGg -3'
miRNA:   3'- -UCCCAGaguaaUCgUAGC---------GCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 78951 0.66 0.88023
Target:  5'- uGGGGUCgcuUUGGCcgCGUccGGGgGGGc -3'
miRNA:   3'- -UCCCAGaguAAUCGuaGCG--CCCgCCU- -5'
5519 3' -56.4 NC_001798.1 + 153638 0.66 0.8781
Target:  5'- gGGGGUCggaggggaggCGUaccuucccgcgcggcGCGUcCGCGGGCGGGg -3'
miRNA:   3'- -UCCCAGa---------GUAau-------------CGUA-GCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 5596 0.66 0.873055
Target:  5'- cGaGGUCgcccCGUUGGUc-CGCGGGCGGc -3'
miRNA:   3'- uC-CCAGa---GUAAUCGuaGCGCCCGCCu -5'
5519 3' -56.4 NC_001798.1 + 11615 0.67 0.865666
Target:  5'- cGGGGcuaUCUCGcc-GC-UCGCGGGCGcGGg -3'
miRNA:   3'- -UCCC---AGAGUaauCGuAGCGCCCGC-CU- -5'
5519 3' -56.4 NC_001798.1 + 150419 0.67 0.850263
Target:  5'- cGGGGg--CGgcGGCggCGCgGGGCGGAc -3'
miRNA:   3'- -UCCCagaGUaaUCGuaGCG-CCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 26929 0.67 0.850263
Target:  5'- nGGGUCgggcgGGCGggGuCGGGCGGGc -3'
miRNA:   3'- uCCCAGaguaaUCGUagC-GCCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.