miRNA: 3'- -UCCCAGaGuaaUCGUagCGCCCGCCU- -5'
miRNA: 3'- uCCc-AGAGUAAUCGUa----GCGCCCGCCu -5'
miRNA: 3'- -UCCCAGa---GUaaUCGUaGCGCCCGCCu -5'
miRNA: 3'- -UCCCAGAGUAAUCGUAGCGCCCGCCU- -5'
Results 41 - 44 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 5519 | 3' | -56.4 | NC_001798.1 | + | 146082 | 0.75 | 0.437112 |
|
Target: 5'- aGGGGUC-Cgg-GGCGagGCGGGCGGGc -3' miRNA: 3'- -UCCCAGaGuaaUCGUagCGCCCGCCU- -5' |
|||||||
| 5519 | 3' | -56.4 | NC_001798.1 | + | 5434 | 0.75 | 0.410628 |
|
Target: 5'- cGGcaUCUCAUUAGCGcccggCGCGGGCGGc -3' miRNA: 3'- uCCc-AGAGUAAUCGUa----GCGCCCGCCu -5' |
|||||||
| 5519 | 3' | -56.4 | NC_001798.1 | + | 145785 | 0.75 | 0.402024 |
|
Target: 5'- cGGGGUCcacaCAggAGCG-CGCGGGCGGc -3' miRNA: 3'- -UCCCAGa---GUaaUCGUaGCGCCCGCCu -5' |
|||||||
| 5519 | 3' | -56.4 | NC_001798.1 | + | 22227 | 1.09 | 0.002541 |
|
Target: 5'- gAGGGUCUCAUUAGCAUCGCGGGCGGAa -3' miRNA: 3'- -UCCCAGAGUAAUCGUAGCGCCCGCCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home